Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01523 ATGCACTATAACATGGGGAAGCAAGTTGGCTTTGAGGATGTTCTAAGATACTTTGACGAAGATGGTGATGGAAAGGTTTCGCCTTCAGAGCTGAAGCACGGGCTCGGAATGATGGGTGGTGAGCTTCCAATGAAGGAAGCTGAGATGGCAATTGCGGCATTGGATTCTGATGGAGATGGGTTGCTGAGTTTGGAGGATTTCATTGCTCTCATGGAAGCTGGGGGAGAGGAGCAGAAGTTGAATGACTTGAAGGTAGCTTTTGAGATGTATGACACTGAAAGGTGTGGGTTTATAACCCCTAAGAGCTTGAAAAAGATGCTTAAGAAGATGGGTGAGTCCAAATCCATTGATGAGTGCAAATCTATGATCAAACAGTTTGATTTGAATGGGGATGGTGTCCTAAGCTTTGAAGAATTCAGAATTATGATGCAGTGA 435 0.4391 MHYNMGKQVGFEDVLRYFDEDGDGKVSPSELKHGLGMMGGELPMKEAEMAIAALDSDGDGLLSLEDFIALMEAGGEEQKLNDLKVAFEMYDTERCGFITPKSLKKMLKKMGESKSIDECKSMIKQFDLNGDGVLSFEEFRIMMQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01523 144 Pfam EF-hand domain pair 81 144 IPR002048 GO:0005509
Gma06g01523 144 Pfam EF-hand domain pair 14 71 IPR002048 GO:0005509
Gma06g01523 144 Gene3D - 4 73 - -
Gma06g01523 144 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Gma06g01523 144 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Gma06g01523 144 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 7 144 - -
Gma06g01523 144 Gene3D - 74 144 - -
Gma06g01523 144 ProSiteProfiles EF-hand calcium-binding domain profile. 114 144 IPR002048 GO:0005509
Gma06g01523 144 SUPERFAMILY EF-hand 10 143 IPR011992 -
Gma06g01523 144 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 144 - -
Gma06g01523 144 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Gma06g01523 144 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Gma06g01523 144 CDD EFh 82 144 IPR002048 GO:0005509
Gma06g01523 144 CDD EFh 11 71 IPR002048 GO:0005509
Gma06g01523 144 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Gma06g01523 144 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Gma06g01523 144 SMART efh_1 10 38 IPR002048 GO:0005509
Gma06g01523 144 SMART efh_1 46 74 IPR002048 GO:0005509
Gma06g01523 144 SMART efh_1 82 110 IPR002048 GO:0005509
Gma06g01523 144 SMART efh_1 118 144 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01523 Gma-Chr6 14683929 14685424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01523 7 144 EF-hand Containing Proteins AT1G76650 47.101 1.27e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01523 K13448 - gmx:100778709 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01523 06 14683929 14685424 Gma04g01888 04 49126683 49127105 ECH
Gma06g01523 06 14683929 14685424 Gma06g01523 06 14683929 14685424 ECH