Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01888 ATGGGGAAGCAAGTTGGTTTTGAGGATGTTCTTAGATATTTCGACGAAGATGGTGATGGAAAGGTTTCACCTTCAGAGCTGAAGCACGGGCTGCGAATGATGGGTGGGGAGCTTTTGATGAAGGAAGCTGAGATGGCAATTGCGGCATTGGATTCTGATGGAGATGGGTTGCTGAGTTTGGAGGATTTGATTGCTCTTATGGAAGCTGGGGGAGAGGAGCAGAAGTTGAATGACTTGAAGGTGGCTTTTGAGATGTATGACACTGAAGGGTGTGGGTTTATAACCCCCAAGAGCTTGAAGAGGATGCTTAAGAAGATGGGCGAGTCCAAGTCCATTGATGAGTGCAAAGCCATGATCAAACAGTTTGATTTGAATGGGGATGGTGTGCTAAGCATTGAAGAATTCAGAATTATGATGCAGTGA 423 0.4563 MGKQVGFEDVLRYFDEDGDGKVSPSELKHGLRMMGGELLMKEAEMAIAALDSDGDGLLSLEDLIALMEAGGEEQKLNDLKVAFEMYDTEGCGFITPKSLKRMLKKMGESKSIDECKAMIKQFDLNGDGVLSIEEFRIMMQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01888 140 SUPERFAMILY EF-hand 8 139 IPR011992 -
Gma04g01888 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Gma04g01888 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Gma04g01888 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gma04g01888 140 Pfam EF-hand domain pair 10 67 IPR002048 GO:0005509
Gma04g01888 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Gma04g01888 140 SMART efh_1 78 106 IPR002048 GO:0005509
Gma04g01888 140 SMART efh_1 6 34 IPR002048 GO:0005509
Gma04g01888 140 SMART efh_1 42 70 IPR002048 GO:0005509
Gma04g01888 140 SMART efh_1 114 140 IPR002048 GO:0005509
Gma04g01888 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 140 - -
Gma04g01888 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Gma04g01888 140 CDD EFh 78 140 IPR002048 GO:0005509
Gma04g01888 140 CDD EFh 7 67 IPR002048 GO:0005509
Gma04g01888 140 Gene3D - 4 69 - -
Gma04g01888 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 140 - -
Gma04g01888 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Gma04g01888 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Gma04g01888 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Gma04g01888 140 Gene3D - 70 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01888 Gma-Chr4 49126683 49127105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01888 3 140 EF-hand Containing Proteins AT1G76650 46.377 3.67e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01888 K13448 - gmx:100779557 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01523 06 14683929 14685424 Gma04g01888 04 49126683 49127105 ECH
Gma04g01888 04 49126683 49127105 Gma04g01888 04 49126683 49127105 ECH