Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01292 ATGTTAGGTGAGATGACCCAGAGGGGCTTAGTTCCTGATGTTGTTTGTTACAATGAAATTATTAAAGCAGTGACCTTCAATGCTCTTATGCATGGACTGTGCAAGGCTGGTAAACTTGAGGAGGCACACCTTTTATTGTACAAGATGGAGATTGGGAGAAGTCCTTCGTTATTCTTCTGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATACTGTTAGTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCTGGACAACTTGTGGATGCATACAAGCTTCTCACTCAAGTTGCTTGTAGTGGGGTTATGcctgacattgtgacgtacaatgttctaatcaacggcttttgcaaggctgctaatatcaatggtgctttaaagtttttcaaggatatgcaaaacaaaggGTTCTCACCTAACTCTGTTACTTATGGGACACTTATCGATGGGCTTTTCAGGATTGGCAGAGAAGAGGATGCCTTTAAGATTCGTGAGCATATGCTGAAGCATGGGTGTGAACCTAGCTTTGAAGTTTATAGAGCACTTATGACTTGGTTGTGTAGAAAGAGGAAGGTCTCACAGGCCTTCCGTCTTTATTTGGAATATTTGAAGAACCTTCGTGGCAGGGAAGATGATTCAATCAATGCTTTGGAGCAATGTTTTGTCAGAGGAAAAGTGGAACAGGCATTTCAAGGTTTACTAGAATTGGACTTCAGGTTGAGAGATTTTGCTTTAGCTCCATATACAATTCTACTTATTGGATTTTGCCAGGCAGAAAAAGTAGATGAAGCATCAGTTATATTTTCTGTTCTTGATAAGTTCAATATCAATATCAATCCTACAAGTTGTGTATTTTTAATCCGAGGTCTCAGTGAAAAAGGAAGGCTGGATGATGCAGTAAACATCTTCCTTTACACTCTTGACAGATGTTTCAAGTTGAAGTCAAGTGTTTGTGAGCAGCTCCTCAACCATCTTAATCTTTCCCAAGATAAAAAGGAGTGTGCTATTGATCTTGTTCATAGGATGAAGTCTGCTGGATACCTTTTAAATACTCTTCGCACATCCCCATTACGGAAAGAGGTCTCATGTTGTAGGGGCAATTTCTCTTGCTTTGTTATTCTGCGTGCTTGTCATCATGTGCTGTATGACCCTTCATTTCAGGCAGTTTTGGGATTTCCATTTGTTGTATGCTTCAGTACGTTTCTTCCTATATGTCTAAGAGCATTTTGGCAAACATTGACAAGGAAGAGGGAAAGAAGACAGACATTATGGTTGTTCTTTGGTGATATCTCACTCATGCATTGTACACCAGCAGGCAAAGGCAAATTTCTTAACGATAcagggaaacagcctcttcgcttccaggataaggcagcatacagttaccctttgcggatccctgcagCCAAATTGAAATGTTGTGAGTTGTGA 1431 0.3564 MLGEMTQRGLVPDVVCYNEIIKAVTFNALMHGLCKAGKLEEAHLLLYKMEIGRSPSLFFWLSQGSDQVLDTVSLQKKVEQMCEAGQLVDAYKLLTQVACSGVMPDIVTYNVLINGFCKAANINGALKFFKDMQNKGFSPNSVTYGTLIDGLFRIGREEDAFKIREHMLKHGCEPSFEVYRALMTWLCRKRKVSQAFRLYLEYLKNLRGREDDSINALEQCFVRGKVEQAFQGLLELDFRLRDFALAPYTILLIGFCQAEKVDEASVIFSVLDKFNININPTSCVFLIRGLSEKGRLDDAVNIFLYTLDRCFKLKSSVCEQLLNHLNLSQDKKECAIDLVHRMKSAGYLLNTLRTSPLRKEVSCCRGNFSCFVILRACHHVLYDPSFQAVLGFPFVVCFSTFLPICLRAFWQTLTRKRERRQTLWLFFGDISLMHCTPAGKGKFLNDTGKQPLRFQDKAAYSYPLRIPAAKLKCCEL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01292 476 Pfam PPR repeat 178 201 IPR002885 -
Gma06g01292 476 Pfam PPR repeat 248 271 IPR002885 -
Gma06g01292 476 TIGRFAM PPR: pentatricopeptide repeat domain 107 141 IPR002885 -
Gma06g01292 476 TIGRFAM PPR: pentatricopeptide repeat domain 24 50 IPR002885 -
Gma06g01292 476 TIGRFAM PPR: pentatricopeptide repeat domain 142 175 IPR002885 -
Gma06g01292 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Gma06g01292 476 Gene3D Tetratricopeptide repeat domain 63 240 IPR011990 GO:0005515
Gma06g01292 476 Gene3D Tetratricopeptide repeat domain 243 371 IPR011990 GO:0005515
Gma06g01292 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gma06g01292 476 Pfam PPR repeat 24 50 IPR002885 -
Gma06g01292 476 Pfam PPR repeat family 104 152 IPR002885 -
Gma06g01292 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Gma06g01292 476 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 19 322 - -
Gma06g01292 476 Gene3D Tetratricopeptide repeat domain 1 62 IPR011990 GO:0005515
Gma06g01292 476 PANTHER ATPASE EXPRESSION PROTEIN 3 19 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01292 Gma-Chr6 12099541 12105742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01292 2 359 Glycosyltransferase AT1G05670 25.905 2.78e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01292 - - gmx:100789393 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02121 04 51709214 51713437 Gma06g01292 06 12099541 12105742 GST