Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02121 ATGTTGGCCTTCTCCAAGTTCAGGAAAGCAGCAGCGGAGATCTCCTGCGTTTTCCGGCGAAACCTCCTCCGAAGATTCTCCGTTCCGTCCGAGGAACCTGTCCCTTCGAATCCGCAGATGCCTCTTCGTTTCTGCATCTGGGTGGCGCTCAAGTTCGAGACTTTATCCGACCAAGAATACTGTAACATAGTGAGTAGGGTCCTTAGTACCAACAATTTGTTTTCCCTTTACTGGGAAGCTCTCGAGCTTCTCAAGAAATCTGGGATTTTGATAACTTCTGATTCGGTTAGAGCCTTGACTAGAGCGTATTGGCAAGTGGGTCTCGCCGAAAAGGCTATAGAGTCGTTTGGTAGAATGAGTGAGTTTGGTTGCAAGCCTGATAGTCATGCGTATAACACCGTTTTGAATATTGCTTTGAAGAAAGACTTGTTTGTGTTGGCTCTTGCAGTGTATAATTTGATGCTGAAGTCCAATTGTTGTCCTAATGAGTACACTTATAACATGTTGATTGATGGGTTTTGTAAAAATGATAATGTTAAGGGTGCACTTGAGATGCTTGATGAGATGGGTCAATGGGATATAGTGCCAAGTGTTATATCGTTTTCTGCTATTTTTTCCGGTCTGTGTCACGTGAAGAGGGCAGATGAGGCACACAGGTTGTTTAATGTGATGAAAGAAAGAGGGTTCCAGCCTGATTTGATATGTTATAGTGTTTTAATTAATGGGTATTGCAAGTTGGGGAGGTTAGAAGAAGCCATTTCGTTTCTACGGTTGTTAGAGAGAGATGGGTTAGCCCTTGGAATAAAGGGCTACAGTTCTCTGATTGCTGGCTTTTTTAGCGCAAGGAGATACAATGAAGCACATGCGTGGTACGGAAGGATGTTTAAGAAGGGTATTGTGCCGGATGTTGTTTTGTACACCATTTTGATACGAGGTTTGTCGAGCGAGGGAAGGGTTGGTGAAGCTGCCAAGATGTTAGGTGAGATGACCCAGATAGGCTTAGTTCCTGATGCTGTTTGTTACAATGAAATTATTAAAGGTCTCTGTGATGTTGGTCTTTTGGATCGAGCACGATCTCTCCAACTTGAGATTTCTGAGCATCAAGGGTTTCATAATGTTTGCACACATACCATTATCATCTGTGACCTGTGTAAGAGAGGAATGGCTGAGAAGGCACAGGAAATATTTAATAAGATGGAGAAGCTTGGATGTTTTCCTTCCATAGTGACCTTCAATGCTCTTATGGATGGACTGTGCAAGGCTGGTAAACTTGAGGAGGCACACCTTTTATTGTACAAGATGGAGATTGGGAGAAGTCCTTCGTTATTCTTCCGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATAGTGTTGCTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCTGGACAACTTTTGGATGCATACAAGCTTCTCATTCAACTTGCTGGTAGTGGGGTTATGCCTGACATTGTGACGTACAATGTTCTAATCAATGGCTTTTGCAAGGCTTCTAATATCAATGGTGCTTTAAAGCTTTTCAAGGATATGCAAAATAAGGGGCTCTCACCTAACCCTGTTACTTATGGGACACTTATTGATGGGCTTTTCAGGGTTGGCAGAGAAGAGGATGCCTTTAAGATTCATAAGCATATGTTGAAGCATGGGTGTGAACCTAGCTTTGAAGTTTATAGAGCACTTATGACTTGGTTGTGTAGAAAGAAGAGGGTCTCACAGGCCTTCAGTCTTTATTTGGAATATTTGAAGAACCTTCGTGGCAGGGAAGACAATTCAATCAATGCTTTGGAGGAATGTTTTGTCAGAGGAGAAGTGGAACAGGCATTTCGAGGTTTACTAGAATTGGACTTCAGGTTTAGAGATTTTGCTTTAGCTCCATATACAATTCTACTAATTGGATTTTGTCAGGCAGAAAAAGTAAATGAAGCATTACTTATATTTACTGTTCTTGATAAGTTCAATATCAATATCAATCCTGCAAGTTGCGTATATTTGATCCGAGGTCTCAGTGAAAATGGGAGGCTGGATGATGCAGTAAACATCTTCGTTTACACTCTTGACAAAGGTTTCAAGTTGAAGTCAAGTGTTTGTGAGCAACTCCTCAAAATTCTTTCACAAGATAAAAAGGAGTGTGCTATTGATCTTGTTCCTAGGATGAAACTCAATACACTTTCTAATGAACTAAAGGTCTCATGTTGCAGGGGCAATTTCTTTTGCTTTGATATTCTGCGTGCTTGTCATCATGTGCTGTATGACCCTTCATTTCAGGCATTTTTGGGTTTTCCATTTGTTGTATGCTTCAGTACGTTTCTTCCTATATGTCTAAGAGCATTTTGGCAAACATTGACAAGGAAGAGGGAAAGAAGACTGACTACCATTGTCCAGATGGGTGTTCTTTGGTGA 2421 0.4155 MLAFSKFRKAAAEISCVFRRNLLRRFSVPSEEPVPSNPQMPLRFCIWVALKFETLSDQEYCNIVSRVLSTNNLFSLYWEALELLKKSGILITSDSVRALTRAYWQVGLAEKAIESFGRMSEFGCKPDSHAYNTVLNIALKKDLFVLALAVYNLMLKSNCCPNEYTYNMLIDGFCKNDNVKGALEMLDEMGQWDIVPSVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAISFLRLLERDGLALGIKGYSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGLSSEGRVGEAAKMLGEMTQIGLVPDAVCYNEIIKGLCDVGLLDRARSLQLEISEHQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLFRVGREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKNLRGREDNSINALEECFVRGEVEQAFRGLLELDFRFRDFALAPYTILLIGFCQAEKVNEALLIFTVLDKFNININPASCVYLIRGLSENGRLDDAVNIFVYTLDKGFKLKSSVCEQLLKILSQDKKECAIDLVPRMKLNTLSNELKVSCCRGNFFCFDILRACHHVLYDPSFQAFLGFPFVVCFSTFLPICLRAFWQTLTRKRERRLTTIVQMGVLW 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02121 806 Gene3D Tetratricopeptide repeat domain 179 291 IPR011990 GO:0005515
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 234 264 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 409 435 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Gma04g02121 806 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Gma04g02121 806 Pfam PPR repeat 271 299 IPR002885 -
Gma04g02121 806 Pfam PPR repeat 98 124 IPR002885 -
Gma04g02121 806 Pfam PPR repeat 633 654 IPR002885 -
Gma04g02121 806 Pfam PPR repeat 670 689 IPR002885 -
Gma04g02121 806 Gene3D Tetratricopeptide repeat domain 366 436 IPR011990 GO:0005515
Gma04g02121 806 Gene3D Tetratricopeptide repeat domain 297 365 IPR011990 GO:0005515
Gma04g02121 806 Pfam PPR repeat family 489 537 IPR002885 -
Gma04g02121 806 Pfam PPR repeat family 126 175 IPR002885 -
Gma04g02121 806 Pfam PPR repeat family 196 245 IPR002885 -
Gma04g02121 806 Pfam PPR repeat family 301 350 IPR002885 -
Gma04g02121 806 Pfam PPR repeat family 372 420 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Gma04g02121 806 Gene3D Tetratricopeptide repeat domain 444 590 IPR011990 GO:0005515
Gma04g02121 806 Gene3D Tetratricopeptide repeat domain 47 178 IPR011990 GO:0005515
Gma04g02121 806 Gene3D Tetratricopeptide repeat domain 591 720 IPR011990 GO:0005515
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Gma04g02121 806 PANTHER ATPASE EXPRESSION PROTEIN 3 465 748 - -
Gma04g02121 806 PANTHER ATPASE EXPRESSION PROTEIN 3 40 360 - -
Gma04g02121 806 PANTHER ATPASE EXPRESSION PROTEIN 3 367 599 - -
Gma04g02121 806 PANTHER ATPASE EXPRESSION PROTEIN 3 236 442 - -
Gma04g02121 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02121 Gma-Chr4 51709214 51713437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02121 286 708 Glycosyltransferase AT1G05670 24.766 6.93e-37 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02121 - - gmx:100788461 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02121 04 51709214 51713437 Gma06g01292 06 12099541 12105742 GST