Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01280 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACAAAAGGTGGCAAAGTCATGAAGCAAGTGCGGGAGCACTATCTGCGCGATGATATATACTGCGGCGCACCGTTTTGCACAGTTTGCGATTCTTCCGGTGCTCGCCTCAGTGCTTCTCCTTCCACCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCGATCGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCtGTTTACAACCGTATAAGAGCTATCTGTAGCAATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGTGGGATACATATATTAAGGAAATGAGTGGGGAAACAAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTGATAACTAATGATAAAGAGAACAAAAGAAAGGCTAGTGAAGAGGGCATTTTGGCTGAAACAGTTGAGTCATATGTGAAGTCTTTAGTCCGACCTGATTTACTTGACCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTATTCTGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTAAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGTCTCAGGACCAGTGGCAAGGAGTCTCGTCTCTATCTATAGCCCATGAAGAAGACGAGGATGAGAATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAGCTGTTTCTCAGCAGGGTTCTTCTGAACAACTAAATGCTGTACCCAGTCGTCCTTGTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAATGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAACTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGCGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGAAGATAGGTGATAGAGATACTGAAACTGAGGTGGTTTTGATAGAAAATGATATAAATACACGGCCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGAAGATTTGTCTAATCCAATCCGGAAGGATTTGCGTCATCTGTGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACTCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACAAATTTTGTTCATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACATCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACAGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCTGAAGCCGACATTATTTCTACCAGATACACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCAAGGATGGATGATAGTCGTTTGATGGATCCAATTACTGCTGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAGATTGACACAGAGACTCATGACCCCCTTGATATTGGAATGTACCAGATCCGGGAGGCCAATCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAATAGTTTTCCATTGGTCTCATTATTAAGGTTGCGTCATCCAACACCAACTAGAGAGATGCTTGAACCCTTGTTACAGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTCTCATCATCAAAAGCGTTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCTTACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTGCAGTGGTGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCCAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCTGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACCGAGGCTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCAAACCGACCAAAACTTCAGCTTACCCTCATCTAGAGCATGAAAAAATTGTCGAAGGAACCAAACATTGA 2775 0.431 MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPFCTVCDSSGARLSASPSTILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRWDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLVRPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIYGRSNMNRAFDGDIVAAELLSQDQWQGVSSLSIAHEEDEDENEDVHLAPNSADDAPRAVSQQGSSEQLNAVPSRPCGRIVGIIKRNWHSYCGSLEPMPMPAGNGGIAHALFVSKDRRTPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGKIGDRDTETEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLRHLCVFSVDPPGCKDIDDALHCHSLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILNSFPLVSLLRLRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGECPNSHGGCGASAKPTKTSAYPHLEHEKIVEGTKH 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01280 924 Gene3D - 352 427 - -
Gma06g01280 924 PANTHER RIBONUCLEASE 3 886 - -
Gma06g01280 924 Pfam Dis3-like cold-shock domain 2 (CSD2) 374 441 IPR041505 -
Gma06g01280 924 Pfam PIN domain 54 178 IPR002716 -
Gma06g01280 924 SUPERFAMILY Nucleic acid-binding proteins 430 849 IPR012340 -
Gma06g01280 924 MobiDBLite consensus disorder prediction 299 336 - -
Gma06g01280 924 MobiDBLite consensus disorder prediction 891 924 - -
Gma06g01280 924 CDD PIN_Rrp44-like 9 181 - -
Gma06g01280 924 SUPERFAMILY Nucleic acid-binding proteins 216 425 IPR012340 -
Gma06g01280 924 MobiDBLite consensus disorder prediction 909 924 - -
Gma06g01280 924 SUPERFAMILY PIN domain-like 52 187 IPR029060 -
Gma06g01280 924 Gene3D - 208 313 - -
Gma06g01280 924 Gene3D - 853 911 IPR012340 -
Gma06g01280 924 Gene3D - 9 192 - -
Gma06g01280 924 SMART RNB_2 472 804 IPR001900 GO:0003723|GO:0004540
Gma06g01280 924 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 886 - -
Gma06g01280 924 ProSitePatterns Ribonuclease II family signature. 771 795 IPR022966 -
Gma06g01280 924 SUPERFAMILY Nucleic acid-binding proteins 853 886 IPR012340 -
Gma06g01280 924 Pfam RNB domain 472 802 IPR001900 GO:0003723|GO:0004540
Gma06g01280 924 SMART PIN_9 52 166 IPR002716 -
Gma06g01280 924 MobiDBLite consensus disorder prediction 320 336 - -
Gma06g01280 924 Pfam Rrp44-like cold shock domain 220 319 IPR033771 -
Gma06g01280 924 Pfam S1 domain 854 884 IPR033770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01280 Gma-Chr6 11995847 12016600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01280 K12585 - gmx:100782456 1728.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02130 04 51776279 51791415 Gma06g01280 06 11995847 12016600 GST