Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02130 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATAAAGCAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGTGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCAGTGCTCGCCTCAGTGCTTCGCCTTCCATCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCAATTGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCAATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTGTTGCTTTTAACTAATGACAAAGAGAACAAAAGGAAGGCTAGTGAAGAGGGTATTTTGGCCGAAACAGTTGAGTCATATGTGAAGTCTTTGGACCAACCTGATTTACTTGATCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTCCGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTTAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCATCTCTATCTATAGCCCATGAAGAAGACGAGGATGAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTTCTCAGCAGGGTTCTTCTGAACAAGTAAATGCTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGGTGGTTTTGATAGAAAATGATATAAATACACGGCCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGAAGATTTGTCTAATCCAATCAGGAAGGATTTGCGTCATCTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACGTCCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCCGAAGCAGATATTATTGCCACCTCATACACAAAAAGTGTCATAAAATCTTCTGCGGCATTGTCTTATGTTGAAGCACAGGCAAGGATGGACGATAGTCGATTGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGACCCACTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCAGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGGCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTCTCGTCATCAAAAGCGTTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGGATATCCAAGTTACCACCTGTATTTCAAGACAGTCTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGATGGTAGCCTTTCATACAACGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGGCCAAAACTTCAGCTTACCCTCATCTAG 2805 0.4364 MLHNKSFVKKTKGGKVIKQVREHYLRDDIYCGAPFCTVCDSSSARLSASPSIILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLLTNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAAELLPQDQWQGVSSLSIAHEEDEDEDEDVHLAPNSADDAPRTISQQGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLRHLRVFSVDPPGCKDIDDALHCHVLPNGNFEVGVHIADVTNFVYPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIIATSYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPPVFQDSLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEGRIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDEQQQKIKKMDGSLSYNVLQTVQIHMEVVEPQPNRPKLQLTLI 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02130 934 CDD PIN_Rrp44-like 9 180 - -
Gma04g02130 934 SMART PIN_9 52 165 IPR002716 -
Gma04g02130 934 Pfam RNB domain 471 800 IPR001900 GO:0003723|GO:0004540
Gma04g02130 934 Gene3D - 207 312 - -
Gma04g02130 934 Pfam PIN domain 54 177 IPR002716 -
Gma04g02130 934 SMART RNB_2 471 802 IPR001900 GO:0003723|GO:0004540
Gma04g02130 934 Gene3D - 9 192 - -
Gma04g02130 934 Gene3D - 851 934 IPR012340 -
Gma04g02130 934 SUPERFAMILY Nucleic acid-binding proteins 429 847 IPR012340 -
Gma04g02130 934 PANTHER RIBONUCLEASE 3 934 - -
Gma04g02130 934 MobiDBLite consensus disorder prediction 299 337 - -
Gma04g02130 934 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Gma04g02130 934 Pfam S1 domain 851 920 IPR033770 -
Gma04g02130 934 Gene3D - 351 426 - -
Gma04g02130 934 MobiDBLite consensus disorder prediction 318 336 - -
Gma04g02130 934 ProSitePatterns Ribonuclease II family signature. 769 793 IPR022966 -
Gma04g02130 934 SUPERFAMILY Nucleic acid-binding proteins 215 423 IPR012340 -
Gma04g02130 934 SUPERFAMILY PIN domain-like 53 186 IPR029060 -
Gma04g02130 934 Pfam Rrp44-like cold shock domain 219 309 IPR033771 -
Gma04g02130 934 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 934 - -
Gma04g02130 934 SUPERFAMILY Nucleic acid-binding proteins 851 930 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02130 Gma-Chr4 51776279 51791415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02130 K12585 - gmx:100806652 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02130 04 51776279 51791415 Gma06g01280 06 11995847 12016600 GST