Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01126 ATGGTGAAGCTAGCTTCAGCTAGAGACTTCCGCACCTACGGGCCGGGCCTCGCCAAGAACCGCTGCGAGTACATCAACGCCGGGCTCTATCTTATTGCCTCCGTCGTCCTCGTGTCGGGCCTCGTGGCCCAGCTTTCTTCCTTAGCCCGATCGGGCCTTGTGCTTATCATTGCCGCTCTGGGCATCATCCTCCTCGTCAACCTCCATGACTTCTTCGCCCATCTCGTCGGCATCGATTTCCGGTTGCCCTTGATGGCCTTCGACCTTCAACTCGCTTTCGTTGAGTTCGCCGTTCCTGTCATTCAGATGCTCGGAACGCTTCTTACCTTTCTCGGCGTCTTCTTCCTTTTTATTCAGGAAGAGAAAGGATATGGGTACTTCAAATTGGAAAAGCATGCTCTGAACATGCTGGTTGCTGGTCCTGTATTATGGGTGATAGGATCAATTCATAATTCGTGCCAAATTTATGAGAGAGCGGATGGTCATGTTCAAATCTTGCAGCAGTGTGTGAATGTTCCGTTTTTGATGGGGAGTTTGTCATTCATGCTTAGTGCAATTCTCAATTATCACGAGAAATCTAAAGATATCCACCATGGCCTTCACTTACTCAGTGGTACTTGGATCTGGCTAGGCATTTTCGGAAGCCTAATGTTCTTTATTGGTGGCTTAACAAACTTAATCAAAGTGTTCAAGATGCAACAAATGAATGGAATTAGGCTGGAGAAACTGCGAGGTGGAGCACACGAACGATTGCTGAGTGCGAGAGAAAGACAGATTCCTCTGATAATGGAACATCAAACGAATATAAGCCATCAACCTCAAGAGACCAAAGTTACTTCACCTCTTCCCACTCCTTATAAGGATGTCCTTATTGATTTTGGGTTATCGTTTGAAATGGCATCGGTATCCAGTCAACCACAGTTCCGTTACACTCAGCCACCGTCAAAGGTTCTCCATTTGAGGAACTTGCCATGGGAGTGCACAGAGGAGGAACTGATTGAGCTTGGGAAGCCGTTTGGCAAAGTTGTTAACACAAAATGCAATGTTGGGGCGAATAGAAATCAAGCTTTTATTGAATTTGCAGATTTGAATCAAGCCATTGCAATGATATCGTACTATGCCTCATCATCAGAGCCTGCTCAAGTACGTGGGAAAACTGTATACCTACAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACTACTGCAGATGTTCCCGGGAATGTATTGTTGGTAACGATTGAGGGTGCAGATGCACGTCTTGTCAGCATTGATGTCTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTCGAGAAGACAGCAGGATTTCAGGCACTGGTGCAATTCTCAGATGCAGAGACTGCCACCTCTGCGAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTATCTGCTGCCTGAGCATGTGGGACCATGTACCCTTAGGATCACTTATTCCGGACATTCAGATTTAAGTGTAAAGTTTCAAAGCCACAGGAGCAGAGACTATACTAATCCTTACCTTCCTGTTGCTCCATCAGCTGTCGAGGGAAGTGGACAGGCTATGGTTGGTTTGGATGGGAAAAGATTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGCCCTGTCCAAAAAATTGCAATGTTCGATAAGAATGGTGGTTTGCAGGCTCTGATTCAGTATCCAGATACTCAGACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACATTGCATATATGATGGGGGTTTTTGCAAGCTTCACCTTTCATATTCACGACATACTGATCTAAGTATAAAGGTCAATAATGATAGGAGCAGAGACTATACCATTCCTAATACCCCTATTGTGAACGCCCAACCCTCAATTTTCGGGCAACAATCTGTTTCCATGATGGGCCCTTCACAACAACCATTCTATGGGTCTCAGGCTGGATGGGGGACAGCTCCACCAGCAGCGATAGATAAGGTGATACTCTTAGTAGCTCTTCCTTCACACATTCATTCCTCCTCTGCTCCGAGCGAAGAAGAAGAAACAATAACCATTATGGCCACACTTCAAGCCTCACTTCTCTGCAGAACTTCTCTCCCATTTAGCTCTCACCATCCTCAACTCTACAAACTCCATCCTCACTCTTTCAACTTCCTATCTCCATGCAAAATGTTTCAGCCGCGCCTTCACTCTTCCGTCTCTCGCAGCGTCGCTTCCCGCTCCCAATCCAATCCCTCCGGCGCCGATTCTAGTGTAATTGAAAACGAAGCGACTCCGAGTGTCGTCGACGCTGAGAGTTCCGATCCTTCGATCGGAGAGGAAAAGAGCGAGAGTGCAAAAGAGGAAGAGAGGTTGCCGATTGTGGCGTTGTACGAGGGAGCGAGAGAGAGTGTTGAAAAGGCTTTCGCCGATTTCATGACCTGGTTGCCTCTCTGGCAGCAGGAGAGGCGTTTGGCTAGGTTAATTGTTGACGCCGAGGCGAATCCCAATGATGTCGCCAAACAAACCACACTACTTATTGAACTTAATAAACACAGTCCTGAGTCTGTCATCAAGCACTTTGAAGGAAGGGAGGGTGCTGTAGACAGTATAGGAGTTGTAGAATATCTTCGAGCTCTTGTGGTCACTAATGCTATTGCTGAATATCTGCCAAATGAGGAATATGGGAAACCTTCTAGACTTCCTACCCTGttgcaagagttgaagcagcgagcatcAGGTAAATCAGATGAGCCTATTCTTAGCCCTGGAACATCTGAGAGGCAGCCATTACATGTTGCTATGGTTGATCGCAAAGTATCACAGAAGTCACGTTTTGTACAAGATCTTTTGTCAACTATATTGTTTATTGTTGTTATGGGATTGGTCTGGGTTGTGGGTATGGTTGCACTTCAAAAATTCATAGTAAGCTTGGGTGGGATTGGAACTTCAAGTGTTGGCTCAAGTAGTACATATGCTCCAAAGGAACTAAATAAAGAAGTGGTGCCAGAAAAGAATGTTAAAACATTTAAAGATGTGAAAGGTTGTGACGATGCAAAACAAGAACTTGAGGAAGTTGTGGAATACCTGAAAAATCCAGCTAAATTTACCCGCCTTGGAGGAAAGTTGCCGAAGGGGATTCTCTTGACTGGACCACCTGGAACTGGAAAAACTCTTCTAGCCAAGGCTATTGCTGGAGAAGCTGGTGTTCCATTTTTCTATCGGGCAGGATCAGAATTTGAGGAGATGTATGTTGGAGTTGGTGCTCGACGTGTAAGATCCTTATTTCAAGCAGCAAAAAAGAAGGCTCCTTGTATTATTTTCATTGATGAAATAGATGCTGTTGGTTCAACTAGGAAACAATGGGAAGGTCATACAAAGAAGACATTGCACCAACTACTTGTTGAAATGGATGGATTTGAGCAGAATGAAGGAATAATAGTAATTGCTGCAACAAACCTGCCTGATATTCTTGATCCCGCTTTAACAAGGCCTGGTAGATTTGATAGACATATTGTTGTACCAAATCCAGATTTACGTGGTCGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGATGATATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCTGTCGAAGGTGCAGAGAATTTAGCAGCTGCACAGTTAGAGTTTGCCAAAGATAGAATAATTATGGGTACAGAACGGAAAACAATGTCCATATCCGAAGAGTCAAAAAAGCTTACTGCTTATCATGAGAGTGGCCATGCAATTGTTGCTATTAACACTGAGGGTGCTCAACCAATTCACAAGGCAACAATCATGCCTCGTGGATCTGCTTTAGGAATGGTCACTCAGCTTCCCTCTGGTGATGAGACATCAATCAGCAAGAAGCAGTTACTAGCTCGTCTTGATGTTTGTATGGGAGGAAGAGTGGCAGAAGAAATTATCTTTGGTCAGGATCATATCACAACAGGAGCAAGTAGTGATCTCCATACAGCTACTGAGCTTGCCCAGTATATGGTATCAATTTGTGGGATGAGTGATGCGATAGGGCCAATTCATATAAAGGAGAGTCCTAGTTCTGACTTGCAGTCCCGTATTGATGCAGAGGTTGTGAAACTTCTTAGAGAAGCATATGATCGAGTAAAAGCCCTTCTAAGGAAGCATGAGAAGGCATTACATGCTCTAGCAAATGCATTATTGGAGTATGAGACGCTTAATGCAGAAGAAATCAGGCGGATACTACGACCATATCGGGAAGGAAGACTGCCAAAGGACCAGGAACAAGAAGCAGCAGAAGAGGAGCTCGTGTTGGTCTAA 4425 0.4423 MVKLASARDFRTYGPGLAKNRCEYINAGLYLIASVVLVSGLVAQLSSLARSGLVLIIAALGIILLVNLHDFFAHLVGIDFRLPLMAFDLQLAFVEFAVPVIQMLGTLLTFLGVFFLFIQEEKGYGYFKLEKHALNMLVAGPVLWVIGSIHNSCQIYERADGHVQILQQCVNVPFLMGSLSFMLSAILNYHEKSKDIHHGLHLLSGTWIWLGIFGSLMFFIGGLTNLIKVFKMQQMNGIRLEKLRGGAHERLLSARERQIPLIMEHQTNISHQPQETKVTSPLPTPYKDVLIDFGLSFEMASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHVGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPNTPIVNAQPSIFGQQSVSMMGPSQQPFYGSQAGWGTAPPAAIDKVILLVALPSHIHSSSAPSEEEETITIMATLQASLLCRTSLPFSSHHPQLYKLHPHSFNFLSPCKMFQPRLHSSVSRSVASRSQSNPSGADSSVIENEATPSVVDAESSDPSIGEEKSESAKEEERLPIVALYEGARESVEKAFADFMTWLPLWQQERRLARLIVDAEANPNDVAKQTTLLIELNKHSPESVIKHFEGREGAVDSIGVVEYLRALVVTNAIAEYLPNEEYGKPSRLPTLLQELKQRASGKSDEPILSPGTSERQPLHVAMVDRKVSQKSRFVQDLLSTILFIVVMGLVWVVGMVALQKFIVSLGGIGTSSVGSSSTYAPKELNKEVVPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMYVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVIAATNLPDILDPALTRPGRFDRHIVVPNPDLRGRQEILELYLQDKPLADDIDIKSIARGTPGFNGADLANLVNIAAIKAAVEGAENLAAAQLEFAKDRIIMGTERKTMSISEESKKLTAYHESGHAIVAINTEGAQPIHKATIMPRGSALGMVTQLPSGDETSISKKQLLARLDVCMGGRVAEEIIFGQDHITTGASSDLHTATELAQYMVSICGMSDAIGPIHIKESPSSDLQSRIDAEVVKLLREAYDRVKALLRKHEKALHALANALLEYETLNAEEIRRILRPYREGRLPKDQEQEAAEEELVLV 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01126 1474 Gene3D - 1194 1267 - -
Gma06g01126 1474 Coils Coil 1407 1444 - -
Gma06g01126 1474 CDD RRM3_PTBPH1_PTBPH2 541 637 IPR034794 -
Gma06g01126 1474 SMART AAA_5 1060 1195 IPR003593 -
Gma06g01126 1474 MobiDBLite consensus disorder prediction 760 806 - -
Gma06g01126 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 371 IPR000504 GO:0003723
Gma06g01126 1474 Gene3D Peptidase M41 1268 1457 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma06g01126 1474 CDD RRM2_PTBPH1_PTBPH2 408 502 IPR034793 -
Gma06g01126 1474 PANTHER METALLOPROTEASE M41 FTSH 796 1455 - -
Gma06g01126 1474 Pfam Peptidase family M41 1274 1449 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma06g01126 1474 CDD RRM1_PTBPH1_PTBPH2 314 394 IPR034792 -
Gma06g01126 1474 CDD AAA 1038 1192 - -
Gma06g01126 1474 Pfam AAA+ lid domain 1215 1247 IPR041569 -
Gma06g01126 1474 ProSitePatterns AAA-protein family signature. 1163 1181 IPR003960 GO:0005524|GO:0016887
Gma06g01126 1474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 394 IPR000504 GO:0003723
Gma06g01126 1474 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 796 1455 - -
Gma06g01126 1474 Pfam RRM-like domain 541 619 IPR021790 -
Gma06g01126 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 408 474 - -
Gma06g01126 1474 SUPERFAMILY FtsH protease domain-like 1275 1453 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma06g01126 1474 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 8 1470 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma06g01126 1474 Pfam ATPase family associated with various cellular activities (AAA) 1064 1192 IPR003959 GO:0005524|GO:0016887
Gma06g01126 1474 Gene3D - 303 410 IPR012677 -
Gma06g01126 1474 SMART rrm1_1 545 615 IPR000504 GO:0003723
Gma06g01126 1474 SMART rrm1_1 317 390 IPR000504 GO:0003723
Gma06g01126 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1026 1291 IPR027417 -
Gma06g01126 1474 MobiDBLite consensus disorder prediction 760 789 - -
Gma06g01126 1474 MobiDBLite consensus disorder prediction 792 806 - -
Gma06g01126 1474 Gene3D - 411 519 IPR012677 -
Gma06g01126 1474 Gene3D - 540 645 IPR012677 -
Gma06g01126 1474 SUPERFAMILY RNA-binding domain, RBD 304 399 IPR035979 GO:0003676
Gma06g01126 1474 SUPERFAMILY RNA-binding domain, RBD 423 516 IPR035979 GO:0003676
Gma06g01126 1474 SUPERFAMILY RNA-binding domain, RBD 548 642 IPR035979 GO:0003676
Gma06g01126 1474 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 967 1450 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma06g01126 1474 Gene3D - 1004 1193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01126 Gma-Chr6 10574538 10603021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01126 711 1452 Miscellaneous Gene Families AT5G53170 70.064 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01126 K08955 - gmx:100814187 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02275 04 53198524 53207897 Gma06g01126 06 10574538 10603021 GST