Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02275 ATGGTGAAGCTAGCTTCCGCAAGGGTCTTCCGCACCTACGGCCCGGGCCTGGCCAAGAACCGCTACGAGTACATCAACGCCGCCCTCTATCTCATTGCCTCCCTCGTCCTTCTGTCGGGCCTGGCGGCCCAGCTTTCTTCCGAAGCCCGATCCGGCCTGGTGCTTATCATCGCCGCCTTGGCCATCATCCTCCTCGTCAACCTCCATGACCTCTTCGCCCACCTCGTCGGCATCGATTTCCGGTTGCCCTTGATCGCCTTCGACCTTCAACTCGCCTTCGTCGAGTTCGCGGTCCCTGTCATTCAGATGTTCGGAACGCTTCTTGCCTTTCTAGGCGTCTTCTTCCTTTTTATTCAGGAAGAGAAAGGATATGGGTACTTCAAATTGGAAAAGCATGCTCTGAACATGCTGGTTGCTGGTCCTGTATTGTGGGTGATAGGATCGATTCATAATTCGTGCCAAATTTATGAGAGAGCGGATGGTCATGTGCAAATCTTGCAGCAGTGTGTGTATATTCCATTTTTGATGGGGAGTTTGTCATTCATGCTTAGTGCAATTCTCAATTATCACGAGAAATCTAGAGATATCCACCATGGCCTTCACTTACTTGGTGGTACTTGGATCTGGCTAGGCATCTTTGGAAGCCTAATGTTCTTTATTGGTGGATTGACAAACTTAATCAAAGTGTTCAAGATGCAACAAATGAATGGAATTAGGCTGGAGAAACTGCGAGGTGAAGCACATGAACGACTGCTGAGTGCGAGAGAAGCACAGATTCCCCTGATCATGGAACATCAAACAAATATAAGCCATCAACCTCAAGAGACCAAAGTTACTTTACCTCTTCCCACTCCTTACAAGGATGTCCTTATTGATTTTGAGTCATTGTTTGAAATGGCATCGGTATCTAGTCAGCCACAGTTCCGTTACACTCAGCCGCCGTCAAAGGTGCTTCATTTGAGGAACTTGCCGTGGGAGTGCACAGAGGAGGAACTGATTGAGCTTGGGAAGCCGTTTGGCAAAGTTGTTAACACAAAATGCAATGTTGGGGCAAATAGAAATCAAGCTTTTATTGAATTTGCAGATTTGAATCAAGCCATTGCAATGATATCATACTATGCCTCATCATCAGAGCCTGCTCAAGTACGAGGGAAAACTGTATACCTACAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACTGCTGCAGATGTTCCTGGGAATGTATTGTTGGTAACGATTGAGGGTGCAGATGCACGTCTTGTCAGCATTGATGTCTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTCGAGAAGACAGCAGGATTTCAGGCACTGGTGCAATTCTCAGATGCAGAGACTGCCACCTCTGCGAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTATCTGCTGCCTGAGCATATGGGACCATGTACCCTTAGGATCACTTATTCTGGACATTCAGATTTAAGTGTAAAGTTTCAAAGCCACAGGAGCAGAGACTATACTAATCCTTACCTTCCTGTTGCTCCATCAGCTGTGGAGGGAAGTGGACAGGCTATGGTTGGCTTGGATGGGAAAAGACTGGAGGCTGAGAGTAATGTTCTCCTTGCATCTATTGAAAACATGCAATATGCCGTAACACTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGTCCTGTCCAAAAAATTGCAATGTTCGATAAGAATGGTGGTTTGCAGGCTCTGATTCAATTTCCAGATACTCAGACAGCTGTTGTGGCCAAGGAGGCCTTGGAAGGACATTGCATATATGATGGAGGTTTTTGCAAGCTTCACATTTCATATTCACGACATACTGATCTAAGTATAAAGGTCAATAATGATAGGAGCAGAGACTATACCATTCCTAATACCCCTGCTGTGAACGTCCAACCCTCAATTTTAGGGCAACAATCTGTTCCCATGATGGGCCCTCCACAACAACCATACAATGGGTCTCAGGCTGGATGGGGGACAGCTCCACCAGCAACAACGGTTCAGTCTATGCCAATGCAGATGCACAATAATGTTTACATGCCATCTGGAACTATGCCACAACAAATGGCCCCTGGAATGCAATTTCCAAATCTCTACATTGATGTTGAATATTGA 2160 0.456 MVKLASARVFRTYGPGLAKNRYEYINAALYLIASLVLLSGLAAQLSSEARSGLVLIIAALAIILLVNLHDLFAHLVGIDFRLPLIAFDLQLAFVEFAVPVIQMFGTLLAFLGVFFLFIQEEKGYGYFKLEKHALNMLVAGPVLWVIGSIHNSCQIYERADGHVQILQQCVYIPFLMGSLSFMLSAILNYHEKSRDIHHGLHLLGGTWIWLGIFGSLMFFIGGLTNLIKVFKMQQMNGIRLEKLRGEAHERLLSAREAQIPLIMEHQTNISHQPQETKVTLPLPTPYKDVLIDFESLFEMASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQFPDTQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPAVNVQPSILGQQSVPMMGPPQQPYNGSQAGWGTAPPATTVQSMPMQMHNNVYMPSGTMPQQMAPGMQFPNLYIDVEY 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02275 719 Gene3D - 303 409 IPR012677 -
Gma04g02275 719 SUPERFAMILY RNA-binding domain, RBD 548 642 IPR035979 GO:0003676
Gma04g02275 719 SUPERFAMILY RNA-binding domain, RBD 423 516 IPR035979 GO:0003676
Gma04g02275 719 SUPERFAMILY RNA-binding domain, RBD 304 398 IPR035979 GO:0003676
Gma04g02275 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 541 621 IPR000504 GO:0003723
Gma04g02275 719 CDD RRM3_PTBPH1_PTBPH2 541 637 IPR034794 -
Gma04g02275 719 Pfam RRM-like domain 540 619 IPR021790 -
Gma04g02275 719 SMART rrm1_1 545 615 IPR000504 GO:0003723
Gma04g02275 719 SMART rrm1_1 317 390 IPR000504 GO:0003723
Gma04g02275 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 408 474 - -
Gma04g02275 719 CDD RRM2_PTBPH1_PTBPH2 408 502 IPR034793 -
Gma04g02275 719 CDD RRM1_PTBPH1_PTBPH2 314 394 IPR034792 -
Gma04g02275 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 371 IPR000504 GO:0003723
Gma04g02275 719 Gene3D - 410 519 IPR012677 -
Gma04g02275 719 Gene3D - 540 645 IPR012677 -
Gma04g02275 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 394 IPR000504 GO:0003723
Gma04g02275 719 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 299 711 - -
Gma04g02275 719 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 299 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02275 Gma-Chr4 53198524 53207897 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02275 K14948 - vvi:100855089 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02275 04 53198524 53207897 Gma06g01126 06 10574538 10603021 GST