Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01078 ATGGTTGGCAAGGATAATCTGAGGGCTGAGGACTTGAACTTGTGCTTTAAGAAGCTTATGATGGTGGCCGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATCACCGAGTGGAAGGATATTCCTGTGGAGCTTCTGATGCAAATTCTGTCCCTTGTGGATGATCAGACGGTGATCATAGCTTCTGGAGTTTGTCGTGGATGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTGTTCCTAAATTCGCAAAACTGCAAACTCTAATCCTCCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAAATGCTGTCATGAACTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTAACTGATCGTTCACTCTATGAGCTCGCCCTTGGTTGTCGCGATCTTACAAAACTCAACATCAGCGGGTGTTCAGCATTTAGTGACAATGCTCTGGCTTACCTTGCCAGCTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGATGTGTTAGAGCTGCATCCGATACTGCATTACAGGCTATTGGACAATACTGCAATCAGCTACAATCTTTGAACCTTGGATGGTGTGATAATGTTGGCGATGTTGGAGTGACTACTTTAGCATATGGGTGTCCTGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGACAGTGTGATTGCTTTGGCGACTAGATGCCCCCATCTGAGGTCCCTAGGACTGTACTACTGCAAGAACATCACAGATAGAGCAATGTATTCCTTGGCACACAGCAAGGTGAACAACAGGATGTGGGGAACTGTGAAAGGAGGAGGAAATGATGAAGATGGTTTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCATCTGCTGTTCAAGCTGTTTGTGACTCATTCCCTTCTCTCCACACATGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGCCTCAACTTGACATCAGTGCATTGTGCCTGTGCTGTCCATGCGCACCGTGCATTCACCACTTTCCCTTATCCTGCCCATTAA 1119 0.4611 MVGKDNLRAEDLNLCFKKLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVIIASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFAKLQTLILRQDKPQLEDNAVETIAKCCHELQILDLSKSFKLTDRSLYELALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALATRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRMWGTVKGGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTTFPYPAH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01078 372 SUPERFAMILY F-box domain 42 78 IPR036047 GO:0005515
Gma06g01078 372 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 354 - -
Gma06g01078 372 Gene3D - 39 80 - -
Gma06g01078 372 SUPERFAMILY RNI-like 79 352 - -
Gma06g01078 372 Pfam F-box domain 42 76 IPR001810 GO:0005515
Gma06g01078 372 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
Gma06g01078 372 Pfam Leucine Rich repeat 261 284 IPR001611 GO:0005515
Gma06g01078 372 Gene3D Ribonuclease Inhibitor 81 295 IPR032675 -
Gma06g01078 372 PANTHER UNCHARACTERIZED 1 354 - -
Gma06g01078 372 SMART LRR_CC_2 261 286 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 303 328 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 209 234 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 235 260 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 156 181 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 103 129 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 182 208 IPR006553 -
Gma06g01078 372 SMART LRR_CC_2 130 155 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01078 Gma-Chr6 10110910 10114479 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01078 K03875 - gmx:100797840 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01078 06 10110910 10114479 Gma06g01078 06 10110910 10114479 ECH
Gma04g02318 04 53623406 53625845 Gma06g01078 06 10110910 10114479 GST
Gma14g01505 14 35531304 35535942 Gma06g01078 06 10110910 10114479 PCT
Gma06g01078 06 10110910 10114479 Gma14g01505 14 35531304 35535942 PCT