Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01074 ATGAACTCGGACCCTTCACAAGAAGTGCACCGTGATGCCTTTGTGCTGGCCACTTTTCTTGGCGCTTGTGCTGACTTGCTGGCTCTCGACTGTGGGAAGCAAGTCCATGCTCATGTTTTCGTTGATGGCATGGGGTTGGAGCTTGACAGGGTCTTGTGCAGCTCGCTGATTAACTTGTATGGGAAGTATGGTGATTTGGATAGTGCTGCTCGCGTTGAGAGTTTTGTGAGGGATGTGGACGAGTTCTCTTTGTCAGCTTTGATATCTGGTTATGCCAATGCCGGCAGAATGAGGGAGGCGAGAAGGGTTTTTGATAGTAAGGTTGATCCATGTTCTGTGCTATGGAATTCGATTATTTCAGGTTGTGTGTCCAATGGTGAGGAGATGGAAGCGGTGAATCTTTTCAGTGCAATGCTTAGGGATGGTGTTCGGGGAGATGCGTCTACTGTTGCTAATATTTTGAGTGTAGCCAGTGGTTTGCTTGTTGTTGAACTTGTTAAGCAAATCCATATGAATAAGCTGGACTTAAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGGCAGCAAATCATCCCTTGAACTTGGTGAGCAGgaatggagcaagGGAAGGCGCTGCCGGACGACGAAAGGTGGGAATGATGGCTACGGAGACGCCGTCGGAAGCGTCGGAAGAGGGGAGAGGAGGGAGATAAAGCGAGCGGAGAAAAGGGGTGGGACAGTGATGCCGCCGTCGGTTATCATCTCCGACGACAACGCACGGTGGGCAGCGGCGGAGGATGGGAGAGAGGGGGTGGAGAGCACGGAGAAGAGGAAAATGGGAGAAGTTTCAGTGGGGAGGGGTATACTAATACTGTACACCTTGATTAATCATAGGCTCTCAAATGTGCCTGTGGCTTGTAGTTGTGGGCGTGGCATTAGCATTTGCATGTACCCATTATTGAAGCAAGCGCAAGGTCCTTACCCTTCTCTTTCATGTTGCTCTCTCCTCCTAAACCACTGTTTATCTCAAAAATCCCTTAACTGTGTCAAAATCGTGCATGCCCACTTCCTCAAATTGGGACTTAACACCTACACATATTTGGGTAATCGCTGCCTCGACCTTTACTCTGAGTTCGGCCACATTAACGATGCACTGAAGGTGTTTGATGATATTTCCCACAAGAACTCCACTTCCTGGAACATTTGCCTAAAAGGGTTGCTCAAAAGTGGCCAGCCTGGCAAGGCCTGCCACATGTTTGATGCGATGCCTGTTAGAGATGTCGTTTCTTGGAATTCCATGATTTCGGGTTATGCTTCCTGTGGGTATTTAAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAGGCACCGGTGTGAGACCAAGTGGGTTTACTTTCTCCATTTTGATGTCACTCGTGTCAAGTTCCCCTCATGCTAAGCAGATTCACTGTAGGATGATCAGAAGTGGCGTGGATTTGGATAATGTAGTGCTTGGGAATTCGTTAATAAATATTTATGGGAAGCTTGGTCTTGTTGAATATGCTTTTGGTGTGATTATGATTATGAAGCAGTTTGATGTTATATCTTGGAACTCTTTGATCTGGGCCTGTCATAGTGCTGGACACCATGAGTTGGCATTAGAGCAGTTCTATCGGATGAGAGGTGCTGAGTTGTTACCTGATCAGTTTACGTGTTCAGTGTTGATGAGTGTCTGTTCTAACTTGCGAGACTTGGACAAGGGTAAGCAGGTTTTTGCCTTTTGTTTCAAGATGGGATTTATTTATAATAGCATTGTATCCAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTCCGGCTATTTAAGAAACAAGATCAATGGGATTCACCTCTATGCAATTCCATGATTTCAAGTTTTGCTAGACACGATTTAGGGGAAAATGCTTTGCAACTTTTTGTGCTGACCTTGAGGAAGAATATCAGGCCAACAGAATACATGGTTAGCTCTCTCCTGAGTTCTGTTTCGATTTTCTTACCAGTTGAAGTGGGTAATCAAATCCATTCTTTGGTTCCTAAATTGGGTTTTGAGTCAGATGCAGTTGTTGCCAATTCACTTGTCGATATGTATGCTAAATTTGGGTTTATTGGTGATGCCTTGAATATCTTCAATGAAATGAAAATAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGACTTACTATGGCAGAGTGTCTTTGACCATGGACCTCTTCAGGGAATTATTGACTAGAGAAGGCATACTACCAGATCGAATAACACTTACTGCAGTTCTACTAGCATGCAACTATGGGTTATTGGTTGATGAAGGAATCAAAATATTTTCCTCAATGGAGATGGAATTCGGAGTAAAACCCGGAGAAGAACATTATGCATGTGTTGTGGAGATGTTGAGTAAAGCTGGTAAGCTCAAAGAAGCCATTGATATCATAGAAACAATGCCGTGTAGAACTACCTCTGACATTTGGAGGTCAATTCTTTCTGCATGTGCAATTTATGGAGACTTGCAAATTATAGAAGGAGTTGCAAAGAAAATAATGGATAGGGAATCACAGACATCCTTACCTTACTTGGTGTTGGCTCAAGCATATCAAATGAGGGGTAGATGGGATTCCATGGTTCGAATGAGGAAGGCTGTGGAAAATAGAGGTACTAAAGAGTTCATTGGACACAGTTGGATTGGAATAAGAAATAATGTGTACACTTTTGCGTCAAATCAATTACAGCATTATGGTGGCAAGGATCTATATCTGGTGTTGAATTTACTTGTCTGGGAGATGGAGACTGAAGGTTATGTCTAA 2829 0.4355 MNSDPSQEVHRDAFVLATFLGACADLLALDCGKQVHAHVFVDGMGLELDRVLCSSLINLYGKYGDLDSAARVESFVRDVDEFSLSALISGYANAGRMREARRVFDSKVDPCSVLWNSIISGCVSNGEEMEAVNLFSAMLRDGVRGDASTVANILSVASGLLVVELVKQIHMNKLDLKMDKFSFASVISACGSKSSLELGEQEWSKGRRCRTTKGGNDGYGDAVGSVGRGERREIKRAEKRGGTVMPPSVIISDDNARWAAAEDGREGVESTEKRKMGEVSVGRGILILYTLINHRLSNVPVACSCGRGISICMYPLLKQAQGPYPSLSCCSLLLNHCLSQKSLNCVKIVHAHFLKLGLNTYTYLGNRCLDLYSEFGHINDALKVFDDISHKNSTSWNICLKGLLKSGQPGKACHMFDAMPVRDVVSWNSMISGYASCGYLSHALELFVEMQGTGVRPSGFTFSILMSLVSSSPHAKQIHCRMIRSGVDLDNVVLGNSLINIYGKLGLVEYAFGVIMIMKQFDVISWNSLIWACHSAGHHELALEQFYRMRGAELLPDQFTCSVLMSVCSNLRDLDKGKQVFAFCFKMGFIYNSIVSSAAIDLFSKCNRLEDSVRLFKKQDQWDSPLCNSMISSFARHDLGENALQLFVLTLRKNIRPTEYMVSSLLSSVSIFLPVEVGNQIHSLVPKLGFESDAVVANSLVDMYAKFGFIGDALNIFNEMKIKDLVSWNTIMMGLTYYGRVSLTMDLFRELLTREGILPDRITLTAVLLACNYGLLVDEGIKIFSSMEMEFGVKPGEEHYACVVEMLSKAGKLKEAIDIIETMPCRTTSDIWRSILSACAIYGDLQIIEGVAKKIMDRESQTSLPYLVLAQAYQMRGRWDSMVRMRKAVENRGTKEFIGHSWIGIRNNVYTFASNQLQHYGGKDLYLVLNLLVWEMETEGYV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01074 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Gma06g01074 942 Gene3D Tetratricopeptide repeat domain 471 574 IPR011990 GO:0005515
Gma06g01074 942 Gene3D Tetratricopeptide repeat domain 676 774 IPR011990 GO:0005515
Gma06g01074 942 PANTHER OS07G0578800 PROTEIN-RELATED 8 105 IPR045215 GO:0003723|GO:0009451
Gma06g01074 942 Pfam Pentatricopeptide repeat domain 520 569 IPR002885 -
Gma06g01074 942 Pfam PPR repeat family 422 467 IPR002885 -
Gma06g01074 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Gma06g01074 942 PANTHER OS07G0578800 PROTEIN-RELATED 313 942 IPR045215 GO:0003723|GO:0009451
Gma06g01074 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Gma06g01074 942 Gene3D Tetratricopeptide repeat domain 575 671 IPR011990 GO:0005515
Gma06g01074 942 Gene3D Tetratricopeptide repeat domain 775 913 IPR011990 GO:0005515
Gma06g01074 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Gma06g01074 942 PANTHER OS03G0435200 PROTEIN 8 105 - -
Gma06g01074 942 Gene3D Tetratricopeptide repeat domain 316 470 IPR011990 GO:0005515
Gma06g01074 942 Gene3D Tetratricopeptide repeat domain 2 251 IPR011990 GO:0005515
Gma06g01074 942 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Gma06g01074 942 TIGRFAM PPR: pentatricopeptide repeat domain 83 105 IPR002885 -
Gma06g01074 942 TIGRFAM PPR: pentatricopeptide repeat domain 395 424 IPR002885 -
Gma06g01074 942 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Gma06g01074 942 PANTHER OS07G0578800 PROTEIN-RELATED 98 172 IPR045215 GO:0003723|GO:0009451
Gma06g01074 942 PANTHER OS03G0435200 PROTEIN 98 172 - -
Gma06g01074 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Gma06g01074 942 Pfam PPR repeat 83 105 IPR002885 -
Gma06g01074 942 Pfam PPR repeat 696 723 IPR002885 -
Gma06g01074 942 Pfam PPR repeat 726 753 IPR002885 -
Gma06g01074 942 Pfam PPR repeat 627 651 IPR002885 -
Gma06g01074 942 Pfam PPR repeat 113 143 IPR002885 -
Gma06g01074 942 PANTHER OS03G0435200 PROTEIN 313 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01074 Gma-Chr6 10055764 10061651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01074 412 942 Glycoside Hydrolase AT3G49170 30.996 6.20e-77 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01074 - - gmx:102663822 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01074 06 10055764 10061651 Gma06g01074 06 10055764 10061651 ECH
Gma04g02323 04 53684914 53685868 Gma06g01074 06 10055764 10061651 GST