Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00984 ATGGATTTAAACCAAATCCAGTTAGCTTTACGCTGTTGTGGACGCTTTCAAGCTATCAAACATGCCAAATCACTCCACTCTCTTATAATAAAACTTGGCCTCTCAAATCACATTTTTCTCCTTAATAGCATCATCTCTGTCTACGCAAAGTGTTCCCGATTCGATGATGCACGAACCCTTTTCGACGAAATGCCTCACAGGAACATAGTTTCTTTCACAACAATGGTCTCTGCATTCACCAATTCTGGGAGACCCCACGAGGCTCTTACACTCTACAACCACATGCTGGAATCCAAAACCGTGCAACCCAATCAGTTTTTGTACTCTGCGGTTCTCAAGGCATGTGGTCTCGTGGGTGATGTTGAATTGGGCATGTTGGTCCACCAACATGTATCTGAAGCTAGGTTAGAGTTTGACACTGTTCTGATGAATGCCCTCTTGGACATGTACGTCAAATGTGGGAGCTTGATGGATGCCAAACGAGTTTTCCATGAAATCCCGTGTAAAAATTCTACTTCATGGAACACCCTCATTCTTGGACATGCTAAACAGGGTCTGATGAGAGATGCGTTTAATCTGTTTGATCAAATGCCAGAACCAGACCTTGTGTCTTGGAATAGCATCATTGCTGGTCTTGCAGATAATGCTAGCCCCCATGCATTGCAATTTCTTTCTATGATGCATGGGAAGGGCCTTAAACTTGATGCGTTCACATTCCCATGTGCCCTCAAAGCATGCGGTCTTCTTGGCGAGTTAACCATGGGGAGACAGATTCATTGTTGTATTATAAAGTCTGGGCTTGAGTGTAGCTGTTATTGTATATCATCATTGATTGATATGTATTCGAATTGCAAGCTATTAGATGAAGCAATGAAGATATTTGATAAGAACTCTCCTCTTGCTGAAAGCTTGGCAGTATGGAATTCTATGCTTTCTGGGTATGTTGCCAATGGGGATTGGTGGAGGGCACTCGGTATGATTGCTTGTATGCATCATTCTGGTGCACAGTTTGATTCCTATACCTTTAGTATTGCTTTAAAGGTCTGCATCTATTTTGATAACTTGAGGTTGGCATCTCAAGTGCATGGATTGATCATCACCCGTGGCTATGAGTTGGATCATGTTGTTGGAAGCATTCTTATTGATCTATATGCAAAACAGGGCAATATTAACAGTGCATTAAGATTGTTTGAAAGGTTGCCAAATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGTTGTGCTAGACTTGGTTTGGGAACATTAGTTTTTTCCCTCTTTATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTATCAATTGTTCTGAAAGTTTCTTCAAGTTTGGCATCTCTTCAAAGTGGCAAGCAAATTCATTCTTTCTGTCTTAAGAAGGGGTATGAATCAGAGAGAGTTATTACAACTGCTCTTACTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTATTTGACTGTCTTTATGAAATAGATACCATGAGTTGGACCGGGATTATTGTTGGATGTGCACAAAATGGAAGAGCAGACAAGGCAATTAGTATTCTGCATAAGATGATAGAATCAGGTACAAAGCCAAACAAAATCACCATTCTAGGTGTTCTTACTGCATGTAGACATGCAGGCCTAGTTGAAGAGGCATGGACTATATTTAAGTCTATTGAAACAGAGCATGGATTGACACCATGCCCAGAACATTACAATTGTATGGTTGATATATTTGCTAAGGCAGGACGTTTTAAAGAAGCAAGAAACTTGATTAATGATATGCCATTTAAGCCTGACAAAACCATATGGTGCTCCTTGCTTGATGCCTGTGGAACTTACAAGAATCGACATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGCTTCAGTATATATAATGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAAAGTACGAGAAGCTGTAAGAAAAGTAGGTAAAAGCGCAGAAGTGTCAAATTTTAAAGGACATCTAGATGGAAGATACTACAGTGCTACACCAAAGAATACACAATTAAGTATATGCAGCCGTTCAATTCGATATGCTTTCAATACTTGCTATGAGGTTTCACACATTCAATGTTTGCCTCCACCAACAAAAAGGTACAAACTAAAAAAGATTGAGACACCACTAAGCAGCACCGATATGTTGGGGTTAGACAAGAACCTCTCAAGCTATGTCTACCACTTTTTGTATTATTTGATCAGAGGGGAATTCTGGGAGAGCACAGTGTTCTTGGGAAGCCACTTAGCAAGTGCAACAGTACAGTCCAAACCATATGAACCTGAGTACCTGACCCATCATGAGCACTATGCAAACACTGGGGACATGGGTGGGTCCCACTAG 2427 0.405 MDLNQIQLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYNCMVDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVRKVGKSAEVSNFKGHLDGRYYSATPKNTQLSICSRSIRYAFNTCYEVSHIQCLPPPTKRYKLKKIETPLSSTDMLGLDKNLSSYVYHFLYYLIRGEFWESTVFLGSHLASATVQSKPYEPEYLTHHEHYANTGDMGGSH 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00984 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Gma06g00984 808 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 121 - -
Gma06g00984 808 SUPERFAMILY TPR-like 39 661 IPR011990 GO:0005515
Gma06g00984 808 PANTHER BNAC03G28070D PROTEIN 10 121 - -
Gma06g00984 808 Gene3D Tetratricopeptide repeat domain 249 355 IPR011990 GO:0005515
Gma06g00984 808 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Gma06g00984 808 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Gma06g00984 808 TIGRFAM PPR: pentatricopeptide repeat domain 70 101 IPR002885 -
Gma06g00984 808 TIGRFAM PPR: pentatricopeptide repeat domain 580 603 IPR002885 -
Gma06g00984 808 TIGRFAM PPR: pentatricopeptide repeat domain 41 70 IPR002885 -
Gma06g00984 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 67 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 142 169 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 579 603 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 275 296 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 173 199 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 508 536 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 406 433 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 306 334 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 378 403 IPR002885 -
Gma06g00984 808 Pfam PPR repeat 479 500 IPR002885 -
Gma06g00984 808 Pfam PPR repeat family 67 115 IPR002885 -
Gma06g00984 808 Gene3D Tetratricopeptide repeat domain 119 218 IPR011990 GO:0005515
Gma06g00984 808 Gene3D Tetratricopeptide repeat domain 356 461 IPR011990 GO:0005515
Gma06g00984 808 Gene3D Tetratricopeptide repeat domain 2 118 IPR011990 GO:0005515
Gma06g00984 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Gma06g00984 808 PANTHER BNAC03G28070D PROTEIN 85 673 - -
Gma06g00984 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Gma06g00984 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Gma06g00984 808 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 673 - -
Gma06g00984 808 Pfam E motif 622 672 IPR046848 -
Gma06g00984 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gma06g00984 808 Gene3D Tetratricopeptide repeat domain 483 707 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00984 Gma-Chr6 9181284 9185221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00984 1 671 Glycoside Hydrolase AT3G49170 30.073 1.63e-105 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00984 - - gmx:100780678 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00984 06 9181284 9185221 Gma06g00984 06 9181284 9185221 ECH
Gma04g02412 04 54488858 54489745 Gma06g00984 06 9181284 9185221 GST