Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00945 ATGGCTTCTTTCCGCGCCGTGCTTCGTCACACTCACATATACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCACACCTACTATGGCGTTATTTTTAAGTCACGGCGCCACGCGGCACTGTCTTATTCCCTCCAAACCCTCCAGAACCGTTAAATCCCGAGCCAGTTCAGACAACTACAACTTAGTGTTGAAGAAAGACGAGCGCTTGGGAACTGGAGAATGCGTTGACGAGGTTGCAAGTGGGACCACAATTGCGGCCATCGTAACTTCCGTGGGAGGCCCACCTGCCGCCGTCGGAATCGTTCGACTTTCGGGCCCGGGCGCGGTGTCCATCGTGGGCCGATTGTTTCGGCCCGCAAGGAAGACGTGGCGGCCCGCCAGCCACGTCGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTCTTGGCGGTGCCGATGCTGGCCCCGAGGTCGTACACGCGCGAAGACGTGGTTGAGCTTCAGTGCCACGGCAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGATTAGATCTCTCCCAAGCCGAAAACGTCGCGAGATTAATCGCCGCGAAATCTGTGGCTGCTGCAGATGCTGCATTGGAAGGAATCCAGGCATGCGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAATTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCACTGGATTTGAATCTGACTATGGATAAAATCCATAACATGTCAAGAGAGGTTGAGAATGCGTTGGAAACGGCAAATTATGATAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTCAGTGGCATTCCTATAACCCTTCTTGATACAGCAGGCATCAGGGACACGGATGACATTGTGGAAAAGATTGGTGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTCAACAAGATAGACTGTAAACCTTGTGCTGAGACCAAATGGGACAAAGGATGCCAGAGTCATATTTTCAGTAAACGTGTGTTTACATGTGCCGTTACTGGTCAAGGATTGCATGACTTAGAGAGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGACTTGAGGGATGCGGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG 1653 0.4943 MASFRAVLRHTHIYISTFSCFTPPPRTPTMALFLSHGATRHCLIPSKPSRTVKSRASSDNYNLVLKKDERLGTGECVDEVASGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIVGRLFRPARKTWRPASHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQACGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLTMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETKWDKGCQSHIFSKRVFTCAVTGQGLHDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00945 550 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 98 550 IPR004520 GO:0003924|GO:0005525|GO:0006400
Gma06g00945 550 Gene3D Probable tRNA modification gtpase trme; domain 1 73 205 IPR027266 GO:0005515
Gma06g00945 550 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gma06g00945 550 Hamap tRNA modification GTPase MnmE [mnmE]. 84 550 IPR004520 GO:0003924|GO:0005525|GO:0006400
Gma06g00945 550 PANTHER TRNA MODIFICATION GTPASE GTPBP3 83 550 - -
Gma06g00945 550 TIGRFAM small_GTP: small GTP-binding protein domain 303 430 IPR005225 GO:0005525
Gma06g00945 550 Pfam MnmE helical domain 208 547 IPR025867 -
Gma06g00945 550 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 302 471 IPR031168 -
Gma06g00945 550 CDD trmE 300 471 IPR031168 -
Gma06g00945 550 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 83 550 - -
Gma06g00945 550 Gene3D - 303 478 IPR027417 -
Gma06g00945 550 Gene3D tRNA modification GTPase MnmE domain 2 206 550 IPR027368 -
Gma06g00945 550 Pfam 50S ribosome-binding GTPase 304 425 IPR006073 GO:0005525
Gma06g00945 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 466 IPR027417 -
Gma06g00945 550 Pfam GTP-binding protein TrmE N-terminus 85 205 IPR018948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00945 Gma-Chr6 8767794 8771593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00945 K03650 - gmx:100818096 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00945 06 8767794 8771593 Gma06g00945 06 8767794 8771593 ECH
Gma04g00972 04 10235338 10238888 Gma06g00945 06 8767794 8771593 GST