LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g00972	ATGGCTGCTTTCCGCGGCGTGCTTCGTCACATACACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCATACCTACTATGGCGTTGTTTTCAAGTCAGGGTGCCATGTGGCACTGTCTTATTCCCTCCAAAGCCTCCAGAACAGTAAAATCCCGCGCCGGTTCAGAGAACTACAATAACTTAGTGTTGAAGAAAGACGAGCGCTTAGGTGCTGGAGAGTGTGTCGGCGAGGTTGGAAGTGGGACCACGATTGCGGCCATCGTAACTTCCGTGGGGGGCCCACCTGCTGCCGTTGGAATCGTTCGACTTTCTGGCCCGGGCGCGGTGTCCATTGCGGGCCGAGTGTTTCGGCCCGCCCGGAAGACGTGGCGGCCCACTAGCCACGTTGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTTTTGGCGGTTCCGATGCTGGCACCGAGGTCCTACACGCGCGAAGACGTGGTCGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCCCAAGCCGAAAACGTTGCAAGATTAATTGCCGCGAAATCCGTGGCTGCTGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCGCCCCTGGATTTGAATCTGATTATGGATAAAATCCATAACATGTCACGAGAGGTGGAGAATGCGTTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTGCAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTTAGTGGCATTCCTATAACACTTCTTGATACCGCCGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTATGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTAAACAAGATAGACTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCAGAATCATATTTTCAGTAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTGCATGACTTAGAGGGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGGTGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGTAAGGTTACAATCATCCATAAAGGACGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG	1644	0.4927	MAAFRGVLRHIHISTFSCFTPPPRIPTMALFSSQGAMWHCLIPSKASRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRVFRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETEWDKGCQNHIFSKHVFTCAVTGQGLHDLEGAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKDELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g00972	547	Pfam	MnmE helical domain	207	544	IPR025867	-
	Gma04g00972	547	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	82	547	-	-
	Gma04g00972	547	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	463	IPR027417	-
	Gma04g00972	547	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	82	547	-	-
	Gma04g00972	547	TIGRFAM	small_GTP: small GTP-binding protein domain	300	427	IPR005225	GO:0005525
	Gma04g00972	547	CDD	trmE	297	468	IPR031168	-
	Gma04g00972	547	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	299	468	IPR031168	-
	Gma04g00972	547	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	97	547	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Gma04g00972	547	Pfam	GTP-binding protein TrmE N-terminus	84	204	IPR018948	-
	Gma04g00972	547	Gene3D	Probable tRNA modification gtpase trme; domain 1	75	204	IPR027266	GO:0005515
	Gma04g00972	547	Pfam	50S ribosome-binding GTPase	301	422	IPR006073	GO:0005525
	Gma04g00972	547	Gene3D	tRNA modification GTPase MnmE domain 2	205	547	IPR027368	-
	Gma04g00972	547	Hamap	tRNA modification GTPase MnmE [mnmE].	83	547	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Gma04g00972	547	Gene3D	-	300	475	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g00972	Gma-Chr4	10235338	10238888	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g00972	K03650		-	gmx:100779193	1070.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g00972	04	10235338	10238888	Gma04g00972	04	10235338	10238888	ECH
	Gma04g00972	04	10235338	10238888	Gma06g00945	06	8767794	8771593	GST