Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00938 ATGGAGCACTTCAACAATGACGATCTCGAATACATCGTCCACTTCCAAGACGATTTTCCGACGACTgataccacttgttcggaagccagaaacgggaaagatattcagggaatcccctgggagaggcttaactatagcagagacaaataccgtgagaccagactcaagcaatacaaaaattaccagaacTTCTCTCTCTCTCCTCACCACCTCCACAAGGAGTGTTTCCAAGTGCAGAAGGGGCAAACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTCCACTTTCAGctgaggaatttgttgtgggcaacttcaaagcatgatgtataccttatgcaaaattattcagtgatgcactggtccgcattactacaaagaAGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTACGCATCCTGGATTCTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGCAAGAATTTGAAGCAACCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGGTAATGCCATAACCAATGCCGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTAATCACAGCAAATAATGATTCCCAACTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTATTAGTCCGGATGGAAGGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATGGCTGATGCTAACTCTGGAAAGATTACTGGGAGCCTAAAGgggcacttggactactctttttcatcagcttggcacccaaatggacaaatattggccactgggaatcaggacaaaacatgcaggttgtgggacataagaaatctttcacaatctatggctgtgttaaagggaagaatgggtgcaataagagcactaagattcacttcggacggacgatttttggccatggctgaacctgcagacttcgtccatatttttgactcacattcaggttatgaacaaggtcaagagattgacctatttggtgagattgctggcatatcctttagcccagacacagaagctctatttgtgggtattgctgaccgaacctatggtagcttgttagagttcaaCAGAAAACGTCACTATAATTACCTAGACTCGTTTTGA 1248 0.2348 MEHFNNDDLEYIVHFQDDFPTTDTTCSEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSLSPHHLHKECFQVQKGQTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSALLQRSKEVLNVAKPIIPTLTHPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKQPGVLFCGKITTDGNAITNAVDVYRNPAGSLRVITANNDSQLRVFDAENFASLGCFKYDWSVNNTSISPDGRLLAVLGDSTECLMADANSGKITGSLKGHLDYSFSSAWHPNGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRHYNYLDSF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00938 415 ProSitePatterns Trp-Asp (WD) repeats signature. 303 317 IPR019775 -
Gma06g00938 415 SMART WD40_4 236 274 IPR001680 GO:0005515
Gma06g00938 415 SMART WD40_4 277 316 IPR001680 GO:0005515
Gma06g00938 415 SMART WD40_4 320 359 IPR001680 GO:0005515
Gma06g00938 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 325 IPR001680 GO:0005515
Gma06g00938 415 Gene3D - 148 398 IPR015943 GO:0005515
Gma06g00938 415 PANTHER OS03G0386000 PROTEIN 14 415 - -
Gma06g00938 415 SUPERFAMILY WD40 repeat-like 156 396 IPR036322 GO:0005515
Gma06g00938 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 319 - -
Gma06g00938 415 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 14 415 - -
Gma06g00938 415 Pfam WD domain, G-beta repeat 279 316 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00938 Gma-Chr6 8686534 8691719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00938 202 396 Miscellaneous Gene Families AT5G08390 24.490 6.51e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00938 - - gmx:100817036 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00938 06 8686534 8691719 Gma06g00938 06 8686534 8691719 ECH
Gma04g00960 04 9968611 9971601 Gma06g00938 06 8686534 8691719 GST