Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00960 ATGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACTTTATGCAAAACTATTCAGTGATGCACTGGTCCGCATTACTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTAAGCGTCCTGGATTTTTAGCTCAACCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGTAAGAATTTGAAACATCCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTACAGCAATCCTGCTGGGTCATTGAGGGTCATCACAGCAAATAATGATTTCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACCGGAAAGATTACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTTCATCAGCTTGGCACCCAGATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGATTGTGGGACATAAGAAATCTTTCACAGTCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCCTAAGATTCACATCTGATGGACGATTTTTGGCCATGGCTGAGCCTGCAGACTTTGTCCATATTTTTGACTCACATTCTGGTTATGAACAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGCATATCCTTTAGCCCGGACACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTCACTATAATTACCTAGACTCGTTTTGA 945 0.4222 MLRNLLWATSKHDVYFMQNYSVMHWSALLRRGKEVLNVAKPIIPTLKRPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKHPGVLFCGKITTDDNAITNAVDVYSNPAGSLRVITANNDFQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFSSAWHPDGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRHYNYLDSF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00960 314 SUPERFAMILY WD40 repeat-like 55 295 IPR036322 GO:0005515
Gma04g00960 314 ProSitePatterns Trp-Asp (WD) repeats signature. 202 216 IPR019775 -
Gma04g00960 314 SMART WD40_4 77 132 IPR001680 GO:0005515
Gma04g00960 314 SMART WD40_4 219 258 IPR001680 GO:0005515
Gma04g00960 314 SMART WD40_4 135 173 IPR001680 GO:0005515
Gma04g00960 314 SMART WD40_4 176 215 IPR001680 GO:0005515
Gma04g00960 314 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 314 - -
Gma04g00960 314 PANTHER OS03G0386000 PROTEIN 2 314 - -
Gma04g00960 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 218 - -
Gma04g00960 314 Gene3D - 80 311 IPR015943 GO:0005515
Gma04g00960 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Gma04g00960 314 Pfam WD domain, G-beta repeat 178 215 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00960 Gma-Chr4 9968611 9971601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00960 119 295 Miscellaneous Gene Families AT5G08390 25.281 2.09e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00960 - - gmx:100775453 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00960 04 9968611 9971601 Gma04g00960 04 9968611 9971601 ECH
Gma04g00960 04 9968611 9971601 Gma06g00938 06 8686534 8691719 GST