Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00881 ATGGCGAGCCGCTTCCTCTCCGCCGGAATCAGACGGTACGCCTCACCCCTTTTTCTCTCTCCGCTTTCTCATTATCAACCTAATCAACTTCGCAATTTTTGCTTCACCAGTTTTGTGTTCGGTGCACGAACTCTGTGTAGCTCCGAAGCTTCTCGCGCTTCTGCGTTCCCTATGCCGTTCGCGCGAAAATTCAAATTCTCTAAGCAGAGCCCATTGCCGGCGCTTCAAAATTGGGTGGACCAAGGCAACGATGTTTCACCCTTCCAGCTAAGAAGCATCGCCAGAACCCTCGTCAAATCGAAACGCTACCACCACGCCCTCGAGGTATTTGAATGGATAAAAAACCAGAAGAATTTCCATATGATCCCAGCTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATCATGGTCTAATGGAAGCTGAAGAATATTTTATGAATCTACCGGACTCAGCTGCAAAGAAGGCTGCATGTCTCATACTTTTACGTGGCTATGTAAGAGATAGGGACACTAGTAAAGCCGAGACTTTCATGCTGAAGCTCTATGAACTGGGGCTAGTGGTGAGCCCTCACCCTTTTAATGAGATGATGAAACTATATCTAGTAACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGAAATAAAATACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTAGTGAGGAAGAAGGATATGTGGTTGCAGCAGTGGAGACAGTTTTCAGACAAATGCTAAATGACAGGAATGTTGAAGTGGGATGGGGCAGTCTTGCTACATTAGCCAATGCTTATAAGAAAGCAGGACAATCTAAGAAGGCCATTCTGGTTCTCAAAGATGCTGAAAAGAAACTATCTACTTGTAACCGTCTTGGTCACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGATAAGGAAGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTCGTGGAAGAATCAGTTGTGCCAACTACATTTGTATACTAACATGCTTGGTGAAGCTTGGGGACATTGTACAAGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTACGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTCCGGAATGGATTAATGGAAGAAGCTGAATCATTACATCTTCACACATTGCAGAAGGGTGGTTGTCCAAACTATAAGACGTTGGAAATTCTTATGGAAGGATATGTGAATTGGCAAAAAATGGATGAGGCTATTATTACCATGAAAAGAGCTTTGGCTATGATGAAAGATTGCCATTGGAGGCCGCCGCATGGAATTGTGTTAGCCATTGCAGAGTATTTGGAGAAAGATGGGAATCTTGAATATGCAGACAAGTATATTACAGATATCCATAATTTAGGTCTTGTTAGTTTATCATTGTATAAAGTATTGCTTAGAATGCACCTTTCTGCCAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAGTTGAGATTGATAACGAGACACTTTCCATTCTTAAAGCTTTCACTGAGTAG 1566 0.4195 MASRFLSAGIRRYASPLFLSPLSHYQPNQLRNFCFTSFVFGARTLCSSEASRASAFPMPFARKFKFSKQSPLPALQNWVDQGNDVSPFQLRSIARTLVKSKRYHHALEVFEWIKNQKNFHMIPADHAMKLELIIENHGLMEAEEYFMNLPDSAAKKAACLILLRGYVRDRDTSKAETFMLKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYVVAAVETVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLKDAEKKLSTCNRLGHFFLITLYASLKDKEGVLRLWEASKAVRGRISCANYICILTCLVKLGDIVQAKRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTLEILMEGYVNWQKMDEAIITMKRALAMMKDCHWRPPHGIVLAIAEYLEKDGNLEYADKYITDIHNLGLVSLSLYKVLLRMHLSANKPPFHILKMMDEDKVEIDNETLSILKAFTE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00881 521 PANTHER OS02G0796400 PROTEIN 24 520 - -
Gma06g00881 521 Gene3D Tetratricopeptide repeat domain 267 466 IPR011990 GO:0005515
Gma06g00881 521 Pfam PPR repeat 373 392 IPR002885 -
Gma06g00881 521 Gene3D Tetratricopeptide repeat domain 62 259 IPR011990 GO:0005515
Gma06g00881 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Gma06g00881 521 Pfam Pentatricopeptide repeat domain 193 237 IPR002885 -
Gma06g00881 521 PANTHER OS12G0527900 PROTEIN 24 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00881 Gma-Chr6 8155038 8157268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00881 75 441 EF-hand Containing Proteins AT1G02150 33.152 1.34e-70 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00881 - - gmx:100803685 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00881 06 8155038 8157268 Gma06g00881 06 8155038 8157268 ECH
Gma04g00894 04 8953878 8957001 Gma06g00881 06 8155038 8157268 GST