Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00894 ATGGCGAACCGCTTCATTTCCGCCGGAATCAGACGGTACGCACAACCCCGTCTTCTCTCTCCGCTTTCTGATTATCAACCTAATCAACTCAGCAAATTTTGCTTCATCAGTTTTGTGTTCGGTGCACGAACTCTGTGTAGCTCCGTAGATTCTCGCGCTTCCGCGTTCCACGTGCCGCTCGCGCGAAAACTCAAATCCCGTAAGCAGAGTCCATTGCCGGCGCTTAAAAATTGGGTGGACGAAGGCAACGATGTTTCACACTCTGAGCTCAGACGCATCGCCAGAACCCTCGTCAAATCGAAGTGCTACCACCACGCCCTCGAGGTAGTTAAATGGATAGAAAACCAGAAGAATTTCCATATGATCCCAGCTGATTATGCTATGAAATTGGAATTAATCATTGAGAATTATGATCTAATGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCAGCTGCAAAGAAGGCTGCCTGTCTCACACTTCTACGTGGCTATATAAGAGTTAGGGACACTAATAAAGCCGAGACTTTCATGGTGAAGCTCTATGAACTGGGGCTAGTGCTGAGCCCACACCCTTTTAATGAGATGATGAAACTATATCTAGCAACATGTGAGTACAGGAAAGTACCCCTTGTTATGCAGCAAATGAAGCGAAATAAAGTACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTACTGAGGAAGAAGGATATGGGGTTGCAGCAGTTGAGACAGTTTTCAGACAAATGCAAAATGATAGGAATGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGCTTATAAGAAAGCAGGACAATCTAAGAAGGCCATTCTGGTTCTCAAAGATGCTGAAAGGAAACTATCTACCTGTAACCGTCTTGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGAAGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCCAACTACATTTGCATACTGATATGCTTGGTGAAGCTTGGGGACATTGTACAGGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTACGATATCAGAGTGTCTAATGTTCTTTTGGGTGCATATGCGCGCAATGGATCAATGGAAGAAGCTGAATCATTACATCTTCACACATTGCAGAAGGGTGGTTGTCCAAACTATAAGACATTGGAAATTCTCATGGAAGGATATGTGAATTGGCAAAAAATGGATGAGGCTATTATTACCATGAAAAGAGCTTTGGCTATGATGAAAGATTGCCATTGGAGGCCGCCACATGGACTTGTGTTAGCCATTGCAGAGTATTTGGAGAAAGATGGGAATCTCAAATATGCAAACAAGTATATTACAGATCTCCGTAATTTTGGTCTTTTTAGTTTATCATTGTATAAAATATTGCTTAGAATGCACCTTTCTGCCAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAATTGAGATGGATAACGAGACACTTTCCATTCTTAAAGCTTTCACTGGATGTGTTCAAGCTGAAGTGTTTGGAGGTGAAGCAGTAACCTGGAACTCAGTTTCATTCTTAGGCTTTTTCAAGGAAAATTTCAATTCTTACATCAAAAAGCTTTGTGGTCAAACCCAGAAGTTTCATCCATTCATCAATCAGTTCCAGCATATTGGCGAGTAA 1725 0.4174 MANRFISAGIRRYAQPRLLSPLSDYQPNQLSKFCFISFVFGARTLCSSVDSRASAFHVPLARKLKSRKQSPLPALKNWVDEGNDVSHSELRRIARTLVKSKCYHHALEVVKWIENQKNFHMIPADYAMKLELIIENYDLMEAEEYFMNLPDSAAKKAACLTLLRGYIRVRDTNKAETFMVKLYELGLVLSPHPFNEMMKLYLATCEYRKVPLVMQQMKRNKVPCNVLSYNLWMNACTEEEGYGVAAVETVFRQMQNDRNVEVGWSSLATLANAYKKAGQSKKAILVLKDAERKLSTCNRLGYFFLITLYASLKEKEGVLRLWEASKAVGGRISCANYICILICLVKLGDIVQAKRIFLEWESNCQKYDIRVSNVLLGAYARNGSMEEAESLHLHTLQKGGCPNYKTLEILMEGYVNWQKMDEAIITMKRALAMMKDCHWRPPHGLVLAIAEYLEKDGNLKYANKYITDLRNFGLFSLSLYKILLRMHLSANKPPFHILKMMDEDKIEMDNETLSILKAFTGCVQAEVFGGEAVTWNSVSFLGFFKENFNSYIKKLCGQTQKFHPFINQFQHIGE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00894 574 Gene3D Tetratricopeptide repeat domain 265 457 IPR011990 GO:0005515
Gma04g00894 574 PANTHER OS12G0527900 PROTEIN 22 519 - -
Gma04g00894 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Gma04g00894 574 PANTHER OS02G0796400 PROTEIN 22 519 - -
Gma04g00894 574 Pfam PPR repeat 373 392 IPR002885 -
Gma04g00894 574 Gene3D Tetratricopeptide repeat domain 58 243 IPR011990 GO:0005515
Gma04g00894 574 Pfam Pentatricopeptide repeat domain 193 237 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00894 Gma-Chr4 8953878 8957001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00894 34 473 EF-hand Containing Proteins AT1G02150 30.405 2.09e-68 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00894 - - gsj:114409242 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00894 04 8953878 8957001 Gma04g00894 04 8953878 8957001 ECH
Gma04g00894 04 8953878 8957001 Gma06g00881 06 8155038 8157268 GST