Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00828 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTGTGTTGTGGTGGCGGTGATCGGGTTCGTTATTCGGCATAAATGGCAGGTTTCGGAGGCCAGGAAGGAGGAGATCAAGAGGCTTTTCATTTTGGCCGCGGAGGAAACTGCCAGGGCCGAGAAAGAGGCGTCCTATGAGTACGGCACGGCGGTTTCTGCCGCTCCGACCAATCTATGCGCTGTGTGTTATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCCGTTCGCTACTGTTCTTTTGAATGCCAAACTGTTCATTGGCGTCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAACTCACCAGAGTGATGGTGCAACGAGTGATCTTGGCAGCAAGGTAGTAGAGCAAGGCTATTCTGGAATCCATGTTGGGAAGTCTGAAAGTGAAGGCAAAGAATGTAAAATAGCCTCTGAAAGGCCCCCAATTTTTGATATCTGCTTTTCTCCAAAAGTTTCATCTGGAAAGGATGCAAATATTAGAGTTGAGTCTCTTGCAGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACGGGTTCTAGTGATTCATCTGATGGTTCCTCTGTATGTGAGAGCATCATCTCAAATGAGCATGACGGATCAGAGGGACATACTTTTGTTGATCCCACCCTTGACATTCCTGATAACACTATTGATGATAGCATGGGTGTAACCATGTCTTCTTCACCAAAGTTTGCTACTTTGGTTGATTCAGTAGATGGTTTTTCTACAATGCGTAAATTAAATCATACTGGACCTGGTTTTAGTAAAGAAGAGAGTAAGCTTGCATCAAATGGTAATTCAGGTTCAAGTATGTGGAAGGGGAAAACAATTGAGCCTTCTACGGTGTTTTCGGGATTCTGGGATAAAGCTCTTGATTCAAGAGGGATTAAAGATGATACTAAGAATGACACTTACCCATCCTGTTCTGATGAATCCACAGGCAAAAAGACTGCTTCTGAATCTTCATTTCACTTTCCATTCAGTACCATGCCTCCTTTGCATGTACGAGATACCAAGACAAATGATTCTGTATCTGATGATGCTTTTCCAAACTGTATTGGGAACAATATGGCAAGTTCAGGATCAGCATCGTCTGAGAATGACAACATGAATTCTTCGAAGGGGAGGAATTTCTCGTTCATCAACAGCAAAGTTTCCAATGTTAGGAGTTATGTTACTCCAAGTGGTTCTGAGTCTGATCAATTGGAATCTAAAGAAAGCTCTGGGCCACCTTTATCATCTTTCTCCCCTCAGCCCTCCAGTGTTGGCAAAAATTCAGTTTGTGCGGATGCTTTGAGCTTCCATAACTCTCAATCAACTGGCTCATCCAATCTTGTTGTGGCCAACGGTGGGAGCACCTTGAAGTCCACTGAAATTGGTTGCCTGACTTGTGAACTTGCTGATTCTAATTTAGCTTCTGTAACTGAAGAACATCATTCCAGTACAAAACAAGGGAATAATGACATTGAATCTGGCACTCGAGCTGTCACTTCCTCTCAGGTTGCTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATCTGTCAAAGCACTTTCCATTAGTTGTTGGGAGTGATCTTGCTGGAAGACGTAATGACAAGAGTTTTTTCCCTTATGAATTGTTTGTCAAGCTTTATAACTCGAACAAGGTGGAGTTATGCCCATTTGGTCTTGTAAATTGTGGAAACAGTTGTTACGCTAATGCTGTACTTCAGTGCTTAGCATTTACACCACCTCTGACTGCTTATTTGCTTCAAGGATTACATTTGAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATATTGAAGTCAAAGGACACAAAATCTGCTGTGTCTCCTATGGGCATAATCTCCCATCTACAGAATATTGGGAGTCAGCTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTACGGAAGCTGGAGTTAATGCATCGGGCTCATTAGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGTTACCTTCgatcaaagATAAAATGCATGAGATGTGGAGGGAAGTCTGAGCATCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGCGAAATAACAACCCTGGTGGAGGCCCTTCGACGATTTACAAGCACTGAGACTTTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCATATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCCCCGAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATGTCATGAATGCTTCCTTTTCGGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTCCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATTGGATAGAGTCTTGACTAAAGGAGCATATATACTTTTCTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTAATTAGGAACAGAATACTGTCCCCAGATTCAAAAAGTAAAGTCAGTGGAAAGACTCTTACAACAAAAGCAAGATATATATCTACAAATTCTGGTGTTTCTGAACATGCCAATAGTTCCATTTCTTCAGATGACTCACCTGCCTTAGCCTCTTTCTATTCAAAGTTTCACCACCTGAAAAGGATTTTGGAAGAAGACTCGTCAAGTGATAATTCATCCCTTATTAGCAGCAACTCTGATGAAGGTTCTTGTAGTACAGATAGCACCCGTGATTCAACCAACACAGATGACTTCTCCGAATATCTTTTTGGTGATTCAGGGAATGGTTGGAGTAGTGTGTGGAGGAATTCTGATTCTGACACATCCTCCTCCTCCTCATCTTCTCCCTTGAATTGGGGACATTCGCCCCTATCTGATGTGGACCGATATGATTCAGTTTCTCCCGTTGCAGCAGGCTTGCGAGGGATAGATGTTTCTCGTTTGTCTTTTAACACAACTTTACAGCATAGAAAGTTAGATAGTAGTAGGATTAATAGCAACAGTAGTAGTAGGGAGACTGACTCTTTTATGAAACTAGGATCTAACCATTTTAATGATATAGACTCTGGTGTATTATGTAGAAAGCCAGGGAAAAGAACGGATTAA 3378 0.4207 MRVTGDLGFSSLVLVVVCVVVAVIGFVIRHKWQVSEARKEEIKRLFILAAEETARAEKEASYEYGTAVSAAPTNLCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTTHQSDGATSDLGSKVVEQGYSGIHVGKSESEGKECKIASERPPIFDICFSPKVSSGKDANIRVESLAEGNITDSNSELSSNSFSGFSASTGSSDSSDGSSVCESIISNEHDGSEGHTFVDPTLDIPDNTIDDSMGVTMSSSPKFATLVDSVDGFSTMRKLNHTGPGFSKEESKLASNGNSGSSMWKGKTIEPSTVFSGFWDKALDSRGIKDDTKNDTYPSCSDESTGKKTASESSFHFPFSTMPPLHVRDTKTNDSVSDDAFPNCIGNNMASSGSASSENDNMNSSKGRNFSFINSKVSNVRSYVTPSGSESDQLESKESSGPPLSSFSPQPSSVGKNSVCADALSFHNSQSTGSSNLVVANGGSTLKSTEIGCLTCELADSNLASVTEEHHSSTKQGNNDIESGTRAVTSSQVASCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLVVGSDLAGRRNDKSFFPYELFVKLYNSNKVELCPFGLVNCGNSCYANAVLQCLAFTPPLTAYLLQGLHLKSCANKKWCFTCEFERLILKSKDTKSAVSPMGIISHLQNIGSQLGNGREEDAHEFLRHVIDTMQSVCLTEAGVNASGSLEEDTTLMGQTFGGYLRSKIKCMRCGGKSEHQERMMDLTVEIEGEITTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDVMNASFSGHYVCYVKNIQNKWSKVDDSVVTAVELDRVLTKGAYILFYARCSPRAPRLIRNRILSPDSKSKVSGKTLTTKARYISTNSGVSEHANSSISSDDSPALASFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTNTDDFSEYLFGDSGNGWSSVWRNSDSDTSSSSSSSPLNWGHSPLSDVDRYDSVSPVAAGLRGIDVSRLSFNTTLQHRKLDSSRINSNSSSRETDSFMKLGSNHFNDIDSGVLCRKPGKRTD 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00828 1125 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1106 - -
Gma06g00828 1125 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 601 616 IPR018200 GO:0004843|GO:0006511
Gma06g00828 1125 Gene3D - 64 118 - -
Gma06g00828 1125 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 337 357 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 190 243 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 421 452 - -
Gma06g00828 1125 Pfam MYND finger 76 113 IPR002893 -
Gma06g00828 1125 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Gma06g00828 1125 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Gma06g00828 1125 Gene3D Cysteine proteinases 593 914 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 980 1007 - -
Gma06g00828 1125 SUPERFAMILY Cysteine proteinases 596 907 IPR038765 -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 329 379 - -
Gma06g00828 1125 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 600 905 IPR028889 -
Gma06g00828 1125 Pfam Ubiquitin carboxyl-terminal hydrolase 600 902 IPR001394 GO:0004843|GO:0016579
Gma06g00828 1125 MobiDBLite consensus disorder prediction 190 225 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 365 379 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 280 304 - -
Gma06g00828 1125 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1106 - -
Gma06g00828 1125 MobiDBLite consensus disorder prediction 288 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00828 Gma-Chr6 7624102 7631423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00828 580 909 Miscellaneous Gene Families AT4G31670 50.755 2.43e-116 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00828 K11855 - gmx:100793079 2036.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00828 06 7624102 7631423 Gma06g00828 06 7624102 7631423 ECH
Gma04g00837 04 8210114 8217650 Gma06g00828 06 7624102 7631423 GST