Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00837 ATGCGTGTTACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTGTGTTGTGCTGCCGGTGATTGGCTTCGTGATTCGCCGTAAATGGCAGGTCTCGGAGGCCAGGAAGGATGAGATCAAGAGGCTTTTGGTTTTGGCCGCGGAGGAAACTGCCAGGGCCGAGAAAGAGGCGTCCTATGAGTACGGCACAGCGGTTTCCGCCGCTCCGAGCAATCTATGTGCCGTGTGCTATTTTCCCGCCACCGCGCGCTGCGCGCAGTGCAAATCCGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGCCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAACTTGCTGGAGTGATGATGTAACAAGTGATCATGGCCGCAAGCTAGTAGAGCAAGGCTACTCTGGAATCCATGTTGAGAAGTCTGAAAGTGAAGGCAAAGAATGTAAAATAGCCTCTGAAAAGTCCCCAATTTCTGATATCTGCTTTTCTCCAAAAGTTTCACCTGGAAAGGATGGAAATATTAGAGTCGAGTCCCTTGCAGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACGGGTTCTAATGATTCATCTGATGATTCCTCTGTCTGTGAGAGCATCATCTCAAATGAGCATGATGGATCCAAGGGACATACTTTTGTTGATCCTACCCTTGACATTCCTGATAACACTAGTGATGATTGCATGGGTGTAACCATGTCTACTTCACCAAAGTTTGCTACTTTGGTTGATTCAGTAGATGGTTTTTCTACAATGCATAAATTAAATCATACTGGACCTGGTTTTAGTAAAGAAGAGAGTAAGCTTGCATCAAATGGTAATCCAGGTTCAAGTATGTGGAAGGGGAAAACAATTGAGCCTTCTACAGTGGTTTCAGGATTCTGGGATAAAGCTCTTGATTCAAGAGGGATTAAAGATGATACTAAGAATGACACTCATCCATCCTGTTCTGATGAATCCACAGGCAAAAGGACTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTACCATGTCTCCTTTGCATGTAAGAGATACCAAGACAAATGATTCTGTATCTGATGATGCTTTTCCAAACTGTATTGGGAACGATATGGCAAGTTCAGGATCAGCATCATCTGAGAATGACAAGATGAATTCTTTGAAGGGGAGGAATTTCTCGTTCATCAACAGCAAAGTTTCCAGTGTTAGGAGTTATGTTACTCCAAGTGGTTCTGAATCTGATCAATTGGAATCTAAAGACAGCTCTGGGCCACCTTTATCATCTTTCTCCCCTCAATCCTCCAGTGTTGACAAAAATTCAGTTTGTGCAGATGCTTTGAACTTCCATATCTTGCAATCAACTGGCTCTAAGGTATCCAATCATGTTGTGGACAACCGTGGCAGCACCTTGAAGTCCACTGAAATTGGATTCCTGACACGTGAACTTGCTGATTCTAATTTAGCTTCTGGAACTGAAGAACATTCTCATTCCAGTACAAAACAAGGGAATAATGACATTGAATCTGGCACTCAAACTGTCACTTCTTCTCAGGTTGCTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATCTGTCAAAGCACTTTCCATTAGCTGTTGGGAGTGATATTGCTGGAAGACATAATGACAAGAGTTTTTTCCCTTATGAATTGTTTGTCAAGCTTTATAACTCGAACAAGGTGGAGTTATGCCCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCTTAGCATTTACTCCACCTCTGACTGCTTATTTGCTTCAAGGATCACATTCGAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGCGAATTTGAAAGATTGATATTGAAGTCAAAGGACACAAAATCTGCGGTGTCTCCTATGGGCATAATCTCCCATCTACAGAATATTGGGAGTCAGCTTGCTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATTGGGCTCATTAGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGTTACCTTCTATCAAAGATAAAATGCATGAGATGTGGAGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGCGAGATAACAACCCTGGTGGAGGCCCTTCGACGATTTACAAGCACTGAGACTTTAGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCATATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCGAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGCGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATATCATGAATGCTGCCTTTTCGGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATTGGATAGAGTCTTGACAAAAGGAGCATATATGCTTTTCTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTAATTAGGAACAGAATACTGTCCCCAGATTCAAAACGTAAAGTCAGTGGAAAGACTCTTACAACGAAAGCAAGATCTATATCTACAAATTCTGGTGTTGCTGAATATGTCAACAGTTCCATTTCTCCAGATGACTCACCTGCCTTGGACTCTTTCTATTCAAAATTTCACCACCTGAAAAGGATTTTGGAAGAAGACTCGTCAAGTGATAATTCATCCCTTATCAGCAGCAACTCCGATGAAGGTTCTTGTAGTACAGATAGCACCCGTGATTCAACCAGCACAGATGACTTCTCTGAATATCTTTTTGGTGATTCAGGGAATGGCTGGAGTAGTGTGTGGAGGAATTCTGATTCTGACACATCTTCATCATCCTCATCTTCTCCCTTGAATTTGCGACATTCGCCCCTATCTGATATGGACAGGTATGATTCAGTTTCTCCTGATGCAGAAGGCTCGCGAGGGATAGATGTTTCTCGTTTGTCTTCTAACACAACTTTACAGCATAGAAAGTTAGATAGTAGGATTAGTAGCAACAGTAGTAGTAGTAGGGAGACTGACTCTTGTCTGAAACTAGGATCTAACCATTTTAATGATATAGACTATGGTGTATTATGTAGAAAGCCAAGGAAAAGAACGGATTTATATTTTATCAACAGGGAGTTCCGGAGCTAA 3417 0.4191 MRVTGDLGFSSLVLVVVCVVLPVIGFVIRRKWQVSEARKDEIKRLLVLAAEETARAEKEASYEYGTAVSAAPSNLCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTTCWSDDVTSDHGRKLVEQGYSGIHVEKSESEGKECKIASEKSPISDICFSPKVSPGKDGNIRVESLAEGNITDSNSELSSNSFSGFSASTGSNDSSDDSSVCESIISNEHDGSKGHTFVDPTLDIPDNTSDDCMGVTMSTSPKFATLVDSVDGFSTMHKLNHTGPGFSKEESKLASNGNPGSSMWKGKTIEPSTVVSGFWDKALDSRGIKDDTKNDTHPSCSDESTGKRTVSESSFHFSFSTMSPLHVRDTKTNDSVSDDAFPNCIGNDMASSGSASSENDKMNSLKGRNFSFINSKVSSVRSYVTPSGSESDQLESKDSSGPPLSSFSPQSSSVDKNSVCADALNFHILQSTGSKVSNHVVDNRGSTLKSTEIGFLTRELADSNLASGTEEHSHSSTKQGNNDIESGTQTVTSSQVASCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLAVGSDIAGRHNDKSFFPYELFVKLYNSNKVELCPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGSHSKSCANKKWCFTCEFERLILKSKDTKSAVSPMGIISHLQNIGSQLANGREEDAHEFLRHVIDTMQSVCLMEAGVNALGSLEEDTTLMGQTFGGYLLSKIKCMRCGGKSERQERMMDLTVEIEGEITTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVELDRVLTKGAYMLFYARCSPRAPRLIRNRILSPDSKRKVSGKTLTTKARSISTNSGVAEYVNSSISPDDSPALDSFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTSTDDFSEYLFGDSGNGWSSVWRNSDSDTSSSSSSSPLNLRHSPLSDMDRYDSVSPDAEGSRGIDVSRLSSNTTLQHRKLDSRISSNSSSSRETDSCLKLGSNHFNDIDYGVLCRKPRKRTDLYFINREFRS 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00837 1138 MobiDBLite consensus disorder prediction 982 1011 - -
Gma04g00837 1138 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 604 619 IPR018200 GO:0004843|GO:0006511
Gma04g00837 1138 MobiDBLite consensus disorder prediction 325 346 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 325 341 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 288 306 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 421 451 - -
Gma04g00837 1138 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 603 908 IPR028889 -
Gma04g00837 1138 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Gma04g00837 1138 Pfam Ubiquitin carboxyl-terminal hydrolase 603 905 IPR001394 GO:0004843|GO:0016579
Gma04g00837 1138 Gene3D - 64 117 - -
Gma04g00837 1138 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 981 1011 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 1071 1099 - -
Gma04g00837 1138 Coils Coil 39 59 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 1030 1048 - -
Gma04g00837 1138 SUPERFAMILY Cysteine proteinases 599 910 IPR038765 -
Gma04g00837 1138 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1109 - -
Gma04g00837 1138 Gene3D Cysteine proteinases 596 917 - -
Gma04g00837 1138 Pfam MYND finger 76 113 IPR002893 -
Gma04g00837 1138 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 280 306 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 504 528 - -
Gma04g00837 1138 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1109 - -
Gma04g00837 1138 MobiDBLite consensus disorder prediction 1030 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00837 Gma-Chr4 8210114 8217650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00837 583 955 Miscellaneous Gene Families AT4G31670 47.467 9.52e-117 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00837 K11855 - gmx:100795674 1956.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00837 04 8210114 8217650 Gma04g00837 04 8210114 8217650 ECH
Gma04g00837 04 8210114 8217650 Gma06g00828 06 7624102 7631423 GST