Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00725 ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTTGAGTTTTATTTCGGCGATAGCAACCTTCTCACCGATGGTTTCATGAGGAATAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAGCACCTTAATTTGGGTGATGTAAAGCCCGAAGAAGTGGCCCAAGATACCGTGAATGCTGTTGCTCAAACTTTGAGAAATTCAGCTACACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCGCCATTTGAACATGATCTGAAGCTTGAAGATGTGGAGAAACTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTAGAATTTTCTTCAGAGGAAGATGTAGAAAAGGTCATGAAGGAAAAATTGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGATAGAGAAAAAGAACTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCAGCAGAATAACACAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAGAACAAAATGGTGTTGACCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCACTCTGAAATTACTTCAGGAGAAAATGACCAAATGGTAACAGAAAATGTTGGCGATGAtgaagaaaactctgagacgaaagaagcaaaggaaactgaaagtgaagaaaacaatgggatgaaagaaggaaaggtaaccgaaggtgaagaCAAGAAACGACAAGCTGGTGGAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATTCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTATTTCAGAAAAGGATGGCTTGGTTGTAAAGAATTATATTGCTATTCTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAACCTGCTTCGTGGTAATCAAGGCAAGCACCGTGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGGGCAAACATGCACGCTCTAGAGATAACGGGTCTAGAGATCGCCGAAATAAGGCTCAGAAAGTTGATGCTGCATAA 1383 0.389 MATQSLDEETTKKVIRQVEFYFGDSNLLTDGFMRNSITESEDGMISLALICSFNRMRKHLNLGDVKPEEVAQDTVNAVAQTLRNSATLKVSEDGKKVGRKTELPKLEEVEQVEIRTLAVSPFEHDLKLEDVEKLFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSEEDVEKVMKEKLVYAGAELELKPKKDFDADREKELEDYKKSRPPVGSNQQNNTNVEEDYPKGLIIAFKLKSISDEIPSEQNGVDQQAKDNSVVSKTDENPHSEITSGENDQMVTENVGDDEENSETKEAKETESEENNGMKEGKVTEGEDKKRQAGGKFSAAAYKDNMDVVSREDLKSVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWNLLRGNQGKHREFKNKQGRGGWHGRGGKHARSRDNGSRDRRNKAQKVDAA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00725 460 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma06g00725 460 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma06g00725 460 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma06g00725 460 MobiDBLite consensus disorder prediction 194 223 - -
Gma06g00725 460 MobiDBLite consensus disorder prediction 437 460 - -
Gma06g00725 460 MobiDBLite consensus disorder prediction 289 320 - -
Gma06g00725 460 MobiDBLite consensus disorder prediction 244 279 - -
Gma06g00725 460 SUPERFAMILY RNA-binding domain, RBD 337 421 IPR035979 GO:0003676
Gma06g00725 460 MobiDBLite consensus disorder prediction 420 460 - -
Gma06g00725 460 Gene3D - 108 206 IPR012677 -
Gma06g00725 460 ProSiteProfiles xRRM domain profile. 316 446 IPR014886 GO:0003723
Gma06g00725 460 CDD LA_like_plant 10 99 - -
Gma06g00725 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Gma06g00725 460 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Gma06g00725 460 Pfam RNA binding motif 337 429 IPR014886 GO:0003723
Gma06g00725 460 Gene3D - 326 429 IPR012677 -
Gma06g00725 460 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Gma06g00725 460 SMART la 8 100 IPR006630 -
Gma06g00725 460 SMART rrm1_1 116 188 IPR000504 GO:0003723
Gma06g00725 460 SMART rrm1_1 328 392 IPR000504 GO:0003723
Gma06g00725 460 PANTHER OS02G0610400 PROTEIN 4 460 - -
Gma06g00725 460 PANTHER LUPUS LA PROTEIN-RELATED 4 460 IPR045180 -
Gma06g00725 460 MobiDBLite consensus disorder prediction 244 320 - -
Gma06g00725 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Gma06g00725 460 Pfam La domain 14 84 IPR006630 -
Gma06g00725 460 Gene3D - 6 107 IPR036388 -
Gma06g00725 460 MobiDBLite consensus disorder prediction 209 223 - -
Gma06g00725 460 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00725 Gma-Chr6 6584339 6587819 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00725 K11090 - gmx:100786016 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00725 06 6584339 6587819 Gma06g00725 06 6584339 6587819 ECH
Gma04g00736 04 6863832 6867551 Gma06g00725 06 6584339 6587819 GST
Gma14g01321 14 25794916 25821973 Gma06g00725 06 6584339 6587819 PCT
Gma06g00725 06 6584339 6587819 Gma14g01321 14 25794916 25821973 PCT