Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00736 ATGGCGACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTCGAGTTTTATTTCGGCGACAGCAACCTTCTCACCGATGGTTTCATGAGGAAGAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAACACCTTAATTTGGGTGATGTTAAGCCCGATGAAGTGGCCCAAGAAACCGTGAATACTGTTGCTCAAACTTTGAGAAATTCGGCTTCACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGATGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGAAATTTTTTGGTCAATATGCAAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTGTTCTGTGGCACTGCTCTTGTAGAATTCTCTTCAGAGGAAGAAGTAGAAAAGGTTATGAAGGAAAAAATGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGAGAGAGAAAAAGAATTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCACCAGAATAGCTCAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAATTAAAGAGCATTTCAGAAGAAATTCCGTCTGAACAAAATGGTGTTGATCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCGCTCTGAAATTACTTCTGGGGAAAATGATCAAAAGGTAACAGAAAATGTTGGTGTTgatgaagaaaaaaatgagatgaaagaagcaaaggaaactgtaaatgaagaggacaatgagatgaaagaagcagaagaaactgaaagtgaagacaacactgacatgaaagaagcaaagggaactgaaagtgaagacaacaatgggatgaaagaaggaaaggtaaccaaagatgaagaAAAGAAACAACAAGCTGGTGAAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACCGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATCCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGATGGCTTGGTTGTAAAGAATTATATTGCTATTCTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAGCCTGCTTCGTGGTAATCAAGGCAAACACCGAGAATTCAAGAATAAGCAAGGAAGGGGAGGATGGCATGGGAGAGGGGGCAAACATGCACGCTCTAGAGATAATGGGTCTAGAGATCGCCGAAATAAGGCTCAGAAAGTTGGTGGTGCATAA 1467 0.364 MATQSLDEETTKKVIRQVEFYFGDSNLLTDGFMRKSITESEDGMISLALICSFNRMRKHLNLGDVKPDEVAQETVNTVAQTLRNSASLKVSEDGKKVGRKTELPKLEDVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKLFCGTALVEFSSEEEVEKVMKEKMVYAGAELELKPKKDFDAEREKELEDYKKSRPPVGSNHQNSSNVEEDYPKGLIIAFKLKSISEEIPSEQNGVDQQAKDNSVVSKTDENPRSEITSGENDQKVTENVGVDEEKNEMKEAKETVNEEDNEMKEAEETESEDNTDMKEAKGTESEDNNGMKEGKVTKDEEKKQQAGEKFSAAAYKDNMDVVSREDLKSVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWSLLRGNQGKHREFKNKQGRGGWHGRGGKHARSRDNGSRDRRNKAQKVGGA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00736 488 MobiDBLite consensus disorder prediction 194 223 - -
Gma04g00736 488 SUPERFAMILY RNA-binding domain, RBD 365 448 IPR035979 GO:0003676
Gma04g00736 488 MobiDBLite consensus disorder prediction 317 350 - -
Gma04g00736 488 MobiDBLite consensus disorder prediction 280 303 - -
Gma04g00736 488 Gene3D - 338 457 IPR012677 -
Gma04g00736 488 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Gma04g00736 488 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma04g00736 488 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma04g00736 488 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma04g00736 488 CDD LA_like_plant 10 99 - -
Gma04g00736 488 MobiDBLite consensus disorder prediction 243 279 - -
Gma04g00736 488 Pfam RNA binding motif 365 457 IPR014886 GO:0003723
Gma04g00736 488 Coils Coil 282 315 - -
Gma04g00736 488 Pfam La domain 14 84 IPR006630 -
Gma04g00736 488 MobiDBLite consensus disorder prediction 194 209 - -
Gma04g00736 488 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Gma04g00736 488 PANTHER OS02G0610400 PROTEIN 4 486 - -
Gma04g00736 488 Gene3D - 2 104 IPR036388 -
Gma04g00736 488 ProSiteProfiles xRRM domain profile. 344 474 IPR014886 GO:0003723
Gma04g00736 488 MobiDBLite consensus disorder prediction 465 488 - -
Gma04g00736 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Gma04g00736 488 MobiDBLite consensus disorder prediction 448 488 - -
Gma04g00736 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Gma04g00736 488 Gene3D - 107 206 IPR012677 -
Gma04g00736 488 MobiDBLite consensus disorder prediction 243 352 - -
Gma04g00736 488 SUPERFAMILY RNA-binding domain, RBD 108 192 IPR035979 GO:0003676
Gma04g00736 488 SMART la 8 100 IPR006630 -
Gma04g00736 488 PANTHER LUPUS LA PROTEIN-RELATED 4 486 IPR045180 -
Gma04g00736 488 SMART rrm1_1 356 420 IPR000504 GO:0003723
Gma04g00736 488 SMART rrm1_1 116 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00736 Gma-Chr4 6863832 6867551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00736 K11090 - gmx:100803099 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00736 04 6863832 6867551 Gma04g00736 04 6863832 6867551 ECH
Gma04g00736 04 6863832 6867551 Gma06g00725 06 6584339 6587819 GST
Gma14g01321 14 25794916 25821973 Gma04g00736 04 6863832 6867551 PCT
Gma04g00736 04 6863832 6867551 Gma14g01321 14 25794916 25821973 PCT