Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00709 ATGATCAACATGTACTCCAAGTGTGGTATGGTTGGTGAGGCAGGACAAATGTTTAACACTTTGCCAGTGAGAAATGTTATAAGCTGGAATGCAATGATTGCTGGGTATAGCAACGAAAGAAATGGTGAAGAGGCTTTGAATCTATTTCGTGAAATGCAAGAGAAGGGAGAAGTTCCTGATCGATACACGTATTCAAGCTCATTAAAGGCGTGTAGTTGTGCTGGTGCAGTAGGAGAAGGAATGCAAATCCATGCTGCCTTAATTAAACATGGGTTTCCTTACTTGGCTCAATCAGCTGTTGCAGGTGCTCTGGTTGATATTTACGTCAAATGCAGGCGCATGGCCGAAGCTAGGAGGGTGTTCGATCGAATTGAAGTGAAGAGTATGATGTCTCGGAGCACAGTAATTCTTGGTTATGCACAGGAAGATAATTTGACAGAAGCCATGGACTTGTTTAGGGAGTTGAGAGAAAGCAGATATAGAATGGATGGGTTTGTGCTCTCGAGTCTCATGGGTGTATTTGCTGATTTTGCCCTTGTAGAGCAAGGGAAGCAAATGCATGCTTATACCATCAAAGTCCCTTATGGTTTATTGGAAATGTCAGTGGCTAATTCAGTTTTGGATATGTACATGCAATGCGGATTAACAGATGAGGCAGATGCACTCTTCAGAGAGATGCTACCAAGAAATGTGGTCTCATGGACTGTTATGATCACTGGTTATGGGAAACACGGTATAGGGAATAAGGCAGTGTGA 756 0.4286 MINMYSKCGMVGEAGQMFNTLPVRNVISWNAMIAGYSNERNGEEALNLFREMQEKGEVPDRYTYSSSLKACSCAGAVGEGMQIHAALIKHGFPYLAQSAVAGALVDIYVKCRRMAEARRVFDRIEVKSMMSRSTVILGYAQEDNLTEAMDLFRELRESRYRMDGFVLSSLMGVFADFALVEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMQCGLTDEADALFREMLPRNVVSWTVMITGYGKHGIGNKAV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00709 251 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Gma06g00709 251 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 251 - -
Gma06g00709 251 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 251 - -
Gma06g00709 251 Pfam PPR repeat 204 227 IPR002885 -
Gma06g00709 251 Pfam PPR repeat 133 158 IPR002885 -
Gma06g00709 251 Pfam PPR repeat 232 250 IPR002885 -
Gma06g00709 251 Pfam PPR repeat 1 21 IPR002885 -
Gma06g00709 251 Pfam PPR repeat 103 126 IPR002885 -
Gma06g00709 251 Pfam PPR repeat family 24 71 IPR002885 -
Gma06g00709 251 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Gma06g00709 251 TIGRFAM PPR: pentatricopeptide repeat domain 133 163 IPR002885 -
Gma06g00709 251 TIGRFAM PPR: pentatricopeptide repeat domain 27 60 IPR002885 -
Gma06g00709 251 TIGRFAM PPR: pentatricopeptide repeat domain 204 227 IPR002885 -
Gma06g00709 251 Gene3D Tetratricopeptide repeat domain 197 251 IPR011990 GO:0005515
Gma06g00709 251 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00709 Gma-Chr6 6434100 6434855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00709 40 251 Glycoside Hydrolase AT3G49170 26.728 2.17e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00709 - - gmx:100806657 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00720 04 6709795 6711858 Gma06g00709 06 6434100 6434855 GST