Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00720 ATGAGCGAGAGTCGACTATTGAATAAGATTCTGAATAAGTGTTCGAAGCGTCGTTTGCTTGATCAGGGAAAGCAAGTACATGGGGTGGTGGAGAAACTAGGGTTTCGACGTGATTTGGTTTTGAGtaatgatcttattgacatgtacgcaaaatgtggtaccgtggaTTTTGCTTGTATGATGTTTGATCGGATGCCTGAAAGAAATGTGGTCTCTTGGACGGCTCTCATGTGTGGGTACCTGCAAAATAGTGATGCTAAAACCACTTTGCTGTTGTTTGTTAAAATGGGTCGTTCAGATGTTAAGCCGAACGAGTTTACACTTTCCACGAGTTTAAAAGCATGTGGGGTTCTGGGGATTCCTTGGAACGGAATGCAGATTCATGGGGTTTGTGCAAAATCTAATTTTGATTGGGTACCCGTTGTGGGCAATTCTATGATTGACATGTACTCCAAGTGTGGTATGGTTGGTGAGGCAGCCCGAGTGTTTAACACTTTGCCAGTGAGAAATGTTATAAGCTGGAATGCAATGATTGCTGGGTATACCAACGAAAGAAATGGTGAAGAGGCTTTGAATCTATTCCGAGAAATGCGAGAGAAGGGAGAAGTTCCTGATGGATACACATATTCAAGCTCATTAAAGGCGTGTAGTTGTGCTGATGCAGCAGGAGAAGGAATGCAAATACATGCTGCCTTAATCAGACATGGGTTTCCTTACTTGGCTCAATCAGCTGTTGCAGGTGCTCTGGTTGATCTTTATGTCAAATGCAGGCGCATGGCTGAAGCTAGGAAGGTGTTTGATCGAATTGAAGAGAAGAGTGTGATGTCTTGGAGCACACTAATTCTTGGTTATGCACAGGAAGATAATTTGAAAGAAGCCATGGACTTGTTTAGGGAGTTGAGAGAGAGCAGACATAGAATGGATGGGTTTGTACTCTCGAGCATCATAGGTGTATTTGCTGATTTTGCCCTTCTAGAGCAAGGGAAGCAAATGCATGCTTATACCATCAAAGTCCCGTATGAGGAAATTCATGAAGTGTTGAAAGAAATGGAGAAGAGGGTGAAAGAAGAAATGGGCTATGTTCATAGCATAAATTTTTCATTGCATGATGTTGAAGAGGAGTCGAAGATGGAGAGTTTGAGGGTTCATAGCGAGAAATTAGCCATTGGGTTGGTTTTGGTTAGACGAGGATTAAAACTAAAAGGTGAAAGAGTGATTAGGATTTTCAAGAACTTGAGGGTTTGTGGGGATTGTCATGCATTCATCAAAGGTTTGTCAAAGGTTTTGAAGATTGCATTTGTGGTGAGAGATGCAAATAGGTTTCACAGATTTGAGAACGGTTTATGTTCGTGTGGAGATTACTGGTGA 1368 0.4079 MSESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFRRDLVLSNDLIDMYAKCGTVDFACMMFDRMPERNVVSWTALMCGYLQNSDAKTTLLLFVKMGRSDVKPNEFTLSTSLKACGVLGIPWNGMQIHGVCAKSNFDWVPVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYEEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00720 455 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 341 414 - -
Gma04g00720 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Gma04g00720 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Gma04g00720 455 Gene3D Tetratricopeptide repeat domain 226 389 IPR011990 GO:0005515
Gma04g00720 455 Pfam PPR repeat family 169 216 IPR002885 -
Gma04g00720 455 Pfam PPR repeat family 68 115 IPR002885 -
Gma04g00720 455 PANTHER - 1 339 - -
Gma04g00720 455 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 339 - -
Gma04g00720 455 Gene3D Tetratricopeptide repeat domain 2 118 IPR011990 GO:0005515
Gma04g00720 455 Gene3D Tetratricopeptide repeat domain 127 225 IPR011990 GO:0005515
Gma04g00720 455 PANTHER - 341 414 - -
Gma04g00720 455 Pfam PPR repeat 144 166 IPR002885 -
Gma04g00720 455 Pfam PPR repeat 276 303 IPR002885 -
Gma04g00720 455 Pfam PPR repeat 248 273 IPR002885 -
Gma04g00720 455 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Gma04g00720 455 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Gma04g00720 455 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Gma04g00720 455 Pfam DYW family of nucleic acid deaminases 359 455 IPR032867 GO:0008270
Gma04g00720 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00720 Gma-Chr4 6709795 6711858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00720 23 455 Glycoside Hydrolase AT3G49170 29.274 5.16e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00720 - - gmx:100806657 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00720 04 6709795 6711858 Gma06g00709 06 6434100 6434855 GST