Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00552 ATGGGTCACGTAGGTTCCAGCAAGGACGGCACCGAGGCTGGGCCTTCCGCCGCCGCGATGGGCATCGACGACGACGAAGACATCGACCTCGGCGACGTCGATCTCGACCCGACCAACGCCGAAATCCTCGAAGAGCTCGGTGAAGACATTGTGAAATACTGGTGCAAGAAAGCGTCGATGCTCTTCTTCAACGAGTACGGTCTGATCAGCCACCAGATCAACTCCTTTAACCACTTCATCCGCACAGGCCTCCAAAAAACCTTCGAATCCTTCGGAGACCTAGTCGTAACGCCCGGGTTCGACCCTTCCAAGAAGGGAGAAAACGAACACTTCCGTTACGCCTCCGTTAAGTTCGGCAATGTGAAGCTCGATAAACCTATGTTCTGGGGCGGTGAAGGGAACGCGCAGGAGTTTAAGATGCTTCCCAGACACGCGAGAATCCAGAGGATGACCTACGCTTCCAAAGTCAAAATCCAAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTACGGAGTGATAAGTTCAAGACTGGGAAAGCGGAATTCCTTGACAGGGAGGTTATGAAGGAAGACGAGAGGGAAATCATCATTGGGAGATTGCCAGTCATGGTCAAGTCTGATTTATGCTGGATGAAAGAGGCGGAGAAGGAGGATGATGAATTTGACCATGGAGGTTATTTTATCGTTAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTATGGGTTATGAATAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAACAGGATGGTTATTAAACTGGTAGGAAATTCCAGGGGTGAAGAAGTGGAGAATGGGGACATGTCTCTTGCTGTATATTTTTTGTCTGTTGAGGTTCCTGTGTGGGTACTGTTTTTCGCTCTCGGTGTCTCATCTGACAAAGAGATTGTAGATCTCATTGGTTGTGGCAATGATGATGTCAGAATTCAGAATATTCTCTTTGCATCTGTTCGGGATGCTGATGAGAAATGTGGAGCATTTCGAAGAGGTAGGCATGCAGTTCAATATTTAGAAAAATGTGTAAAAAGTGTTCAATTTCCACCTTCGGAGTCTATGCAGGAGTGCCTTGAAATGTATGTCTTCCCTGGAATTAGTGGTTTGAATAGAAAGGCGCGCTTCCTTGCATATATGGTGAAAGGTCTCTTGCTGGCTTATACTGGCCGCCGAAAATGCGACAACAGGGATGATTTTCGAAATAAGAGGCTTGAATTGGCCAGTGAGCTTCTTGACCGTGAGTTGAAAGTGCACATTGCACATGCCCGGAAGCGAATGGCAAAAGCTTTGCAGAGAGACCTTTATGGAGATAGGGATGTACGCCCAATTGAGCATTATCTCGACGCGTCCATAATTACAAATGGCTTGCAAAGGGCATTTTCAACAGGAGCGTGGTCTCATCCATACAAGAGGATGGAAAGGATCTCAGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTACAAACCATGGCTGAGTTAAGAAGAGCGAGGCAGCAGGTCCAGTACACAGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATTTGGCTGTCACAGGATTAGTAAGTACTGATGTATCGGCAGTATCTGAATATATACTGCCTAAATTGCTGGATTGTGGAATGGAAGAACTTGTTGATGATACTTCCACTCATCTTGGGAACAAGGACAAAGTTCTCCTAAATGGCGATTGGGTTGGAGTGTGTCCTGATTCCAGTTCATTTGTGGCAGAGCTACGAAGCAGAAGACGTAGAAATGAACTGCCTCATCAGGTGGAAATCAAGAGAGACCAATCTCAACATGAAGTGCGCATATACTCGGATGCAGGAAGGATTCTACGTCCTCTTTTGGTGGTTGGTAATCTACTCAAGATTAAAGGATTTAAATCAGACTGTAACTCTTTCCAGTCTCTATTGGATAAAGGTGTGATTGAGCTGATTGGACCGGAAGAAGAGGAAGACTGTTGTACAGCCTGGGGTGTTGAGTATTTATTTGGAAAAGAAGGAAAACGATCTGTAAAGTACACTCATTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCGAGGAGGGTACTCTACCAGTCTCAGAAGCACTCCTCACAGGCAATTGGCTTTTCTACAACAAACCCGAACATTAGAGTTGATACTTTGTCTCACCAGTTACACTATCCCCAAAAGCCCCTTTTTCGAACAATGGCTTCAGATTGTCTTGGAAAACCAGACAATTCACTTGGTCAAAATAAAATAAGTAAAATACCTCCAAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTTAATGTACATCTGGGATACAATCAAGAGGATTCCCTTGTGATGAACCGTGCTTCACTGCAGCGTGGTATGTTCAGGTCTGAGCACATAAGGAGTTACAAATCTGAAATCGATAATAAGGAATCTTCAGATAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGCAAAGCTACAAAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGTGCTAATTTGCAGAGCGGTGATATTATTATTGGGAAGGGTGCTGAATCTGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGACGAAGGGAAAAATTTTGCTGTGGTTTCATTAAGACAGGTTCGAAGTCCCGTTCTTGGAGACAAGTTCTCCAGTATGCATGGACAAAAGGGAGTTTTGGGATTTCTGGAGTCTCAGGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATTGTCATAAATCCACATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGCATACTGAGACAAGCTACGCCTTTCTCCACACCTTCTGTTGATGCCATTACTGAACAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTTCGATCACTCATTTTTATGGGACCAACATTTTACCAACGTCTGCACCATATGTCTGAAGACAAAGTGAAATTCCGGAACACTGGTCCAGTTCACCCGTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAGATGGAGCGTGATTGCCTAATAGCTCATGGTGCATCAGCCAACCTGTATGAACGCCTGTTTACACTCAGTGACTCCTCTCAGATTCATATCTGCAGCAAATGCAAAAATGTTGCAAATGTGATCTTGCGGCCTGTCTCTGGTGGCCGGAAAATACGAGGACCTTATTGCCGCCACTGTGAATCTGCGGATGACATTGTGGTGGCTCATGTCCCGTATGGAGCAAAGTTATTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGCTAG 3618 0.4478 MGHVGSSKDGTEAGPSAAAMGIDDDEDIDLGDVDLDPTNAEILEELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIRTGLQKTFESFGDLVVTPGFDPSKKGENEHFRYASVKFGNVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEKEDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRGEEVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLLDCGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00552 1205 Gene3D RNA polymerase Rpb2, domain 2 253 409 IPR037034 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 36 1202 IPR015712 GO:0003899|GO:0006351|GO:0032549
Gma06g00552 1205 Pfam RNA polymerase Rpb2, domain 3 500 557 IPR007645 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 Pfam RNA polymerase Rpb2, domain 2 292 421 IPR007642 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 ProSitePatterns RNA polymerases beta chain signature. 955 967 IPR007121 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 Gene3D RNA polymerase alpha subunit dimerisation domain 1089 1203 - -
Gma06g00552 1205 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 51 1202 - -
Gma06g00552 1205 Gene3D - 729 1088 IPR037033 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 Gene3D - 62 243 - -
Gma06g00552 1205 Gene3D - 410 597 - -
Gma06g00552 1205 Gene3D - 759 951 IPR014724 GO:0003899
Gma06g00552 1205 Pfam RNA polymerase beta subunit 67 458 IPR007644 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 MobiDBLite consensus disorder prediction 1 21 - -
Gma06g00552 1205 CDD RNA_pol_B_RPB2 68 1201 IPR015712 GO:0003899|GO:0006351|GO:0032549
Gma06g00552 1205 Pfam RNA polymerase Rpb2, domain 5 673 719 IPR007647 GO:0006351
Gma06g00552 1205 Pfam RNA polymerase Rpb2, domain 6 728 1102 IPR007120 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 Pfam RNA polymerase Rpb2, domain 7 1104 1202 IPR007641 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 Pfam RNA polymerase Rpb2, domain 4 597 657 IPR007646 GO:0003677|GO:0003899|GO:0006351
Gma06g00552 1205 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 36 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00552 Gma-Chr6 4874382 4879569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00552 - K16252 gmx:100779425 2412.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00552 06 4874382 4879569 Gma06g00552 06 4874382 4879569 ECH
Gma04g00565 04 5057807 5063266 Gma06g00552 06 4874382 4879569 GST