Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00565 ATGGGTCACGTAGGTTCCAGCAAGGACGGCACCAAGGTGGGGCTGTCCGCTGCTGcgatggacatcgacgacgacgacgacgacgacgacgacgacctcggcgacgtcgacCTAGACCCTACGAACTCCGAAATCCTTGAAGAACTCGGCGAAGACATGGTGAAATACTGGTGCAAGAAAGCGTCGATGCTGTTCTTCGACGAGTACGGTCTGATCAGCCACCAGATCAACTCCTTTAACCACTTCGTCGCCATCGGCCTCCAAAACACCTTCGACTCCTTCGGAGACCTAGTCGTAACTCCCGGTTTTGACCCCTCCAAGAAGGGAGAAAACGAACACTTCCGTTACGCCTCCGTTAAGTTCGGCAAGGTGAAGCTCGACAAGCCCATGTTCTGGGGCGGTGAAGGGAATGCGCAGGAGTTCAAGATGCTTCCGAGACACGCGAGAATCCAGAGGATGACCTACGCTTCCAAAGTCAAAATCCAAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAGTTCAAGACTGGGAAAGAGGAGTTCCTTGATAGAGAGATTATGAAGGAAGACGAGAGGGAAATCATCATTGGGAGATTGCCAGTCATGGTCAAGTCTGATTTGTGCTGGATGAAAGACGCGGAAAAAGATGATGATGAATTTGACCATGGAGGTTATTTTATCGTTAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTATGGGTTATGAACAGTCCAGGGTGGATGATTGCCTACAAGTCACAGATGAAGAGAAACAGGATGGTTATTAAACTGGTAGGCAATTCCAGGAGTGAAGAAGTGGAGAATGGGGACATGTGTCTTACTGTATATTTTTTGTCTGTTGAGGTTCCTGTGTGGGTACTGTTTTTTGCTCTCGGTGTCTCATCTGACAAAGAGATTGTAGATCTCATTGGTTGTGGCAATGATGATGTCAGAATTCAGAATATCCTCTTTGCATCTGTTCGTGATGCTGATGAGAAATGTGGAGCATTTCGAAGAGTTAGGAATGCTGTTCAATATTTAGAAAAATGTGTAAAAAGTGTTCAATTTCCACCTTCGGAATCTATGCAGGAGTGCCTTGAAATGTATGTCTTTCCTGGAATTAGTGGTTTAAATAGAAAGGCGCGCTTCCTTGCATATATGGTGAAAGGTCTCTTGCTGGCTTATACTGGCCGCAGAAAATGCGACAACAGGGATGATTTTCGAAATAAGAGGCTTGAATTGGCCAGTGAGCTTCTTGACCGTGAGTTGAAAGTGCATGTTGCACATGCTCGGAAGCGAATGGCAAAGGCTTTGCAGAGAGACCTTTATGGAGATAGGGACGTACGCCCAATTGAACATTATCTTGACGCGTCCATAATTACAAATGGCTTGCAAAGGGCATTTTCAACAGGAGCGTGGTCACATCCGTATAAGAGGATGGAAAGGATCTCAGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTGCAAACCATGGCTGAGTTAAGAAGAGCAAGGCAGCAGGTCCAGTACACAGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCACTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATTTGTCTGTCACAGGATTAGTAAGTACTGATGTAACTGACGTAACTGAATCTATACTGCTAAAATTGGTGGATTGTGGAATGCAAGAACTTGTTGATGATACTTCCACTCATCTTGGCAGCATGGACAAAGTCCTCCTAAATGGTGATTGGGTTGGAGTGTGTCCCGATTCCAGTTCGTTTGTGGCAGAGCTACGAAGTAGAAGACGCAGAAATGAGCTGCCTCATCAGGTGGAAATCAAGAGAGACCAATCTCAGCATGAAGTGCGCATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTTGTTGGTAATCTACTGAAGATTAAAGGATTTAAATCAGACCGTTACTCTTTCCAGTCTCTATTGGACAAAGGTGTTATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGTTGTACTGCCTGGGGTGTTGAGTATTTATTTGGAAAAGAAGGAAAACGATCTGTAAAGTACACTCACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTGCTCTACCAGTCTCAGAAGCACTCCTCACAGGCAATTGGCTTTTCTACAACAAACCCGAACATTAGAGTTGATACTTTGTCTCACCAGTTACACTATCCCCAAAAGCCCCTTTTTCGAACAATGACTTCAGATTGTCTTGGAAAACCAGACCATTCACTGGGTCAAAGTAAAATACCTCCAAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCCTGGTGATGAACCGTGCTTCACTGCAGCGTGGTATGTTCAGGTCTGAGCACATAAGGAGTTACAAATCTGAAATTGACAATAAGGAATCTTCAGATAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGCAAAGCTACAAAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGCGCTAATCTCCAAAGCGGTGATATTATTATTGGGAAGTGTGCTGAATCCGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGACGAGGGTAAAAATTTTGCTGTGGTTTCATTAAGACAGGTTCGTAGTCCAGTTCTTGGAGACAAGTTCTCCAGTATGCATGGTCAAAAGGGAGTTTTGGGATTTCTGGAGTCTCAGGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATTGTCATAAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTATACTGAAACAAGCTACGCCTTTCTCCACTCCTTCTGTTGATGCCATTACTGAACAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTTCGATCACTCATTTTTATGGGACCAACATTTTACCAACGTCTGCACCATATGTCTGAAGACAAAGTGAAATTCCGGAACACTGGTCCAGTTCACCCGTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAGATGGAGCGTGATTGCCTAATAGCTCATGGTGCATCAGCCAACCTGTATGAACGCCTGTTTACACTCAGTGACTCCTCTCAGATTCACATCTGCAGCAAATGCAAAAAAGTTGCAAATGTGATCTTGCGGCCAGTGTCTGGTGGACGGAAAATACGAGGACCTTATTGCCGTCACTGTGAATCTGCGGATGACATTGTGGTGGCCCATGTCCCGTATGGGGCAAAGTTATTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGTTAG 3618 0.4375 MGHVGSSKDGTKVGLSAAAMDIDDDDDDDDDDLGDVDLDPTNSEILEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKKGENEHFRYASVKFGKVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVDCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00565 1205 Pfam RNA polymerase Rpb2, domain 5 676 722 IPR007647 GO:0006351
Gma04g00565 1205 Pfam RNA polymerase beta subunit 70 461 IPR007644 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 Pfam RNA polymerase Rpb2, domain 7 1104 1202 IPR007641 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 Pfam RNA polymerase Rpb2, domain 3 503 560 IPR007645 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 Pfam RNA polymerase Rpb2, domain 6 731 1102 IPR007120 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 ProSitePatterns RNA polymerases beta chain signature. 955 967 IPR007121 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 Gene3D - 413 598 - -
Gma04g00565 1205 Gene3D - 64 247 - -
Gma04g00565 1205 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 54 1202 - -
Gma04g00565 1205 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 39 1202 IPR015712 GO:0003899|GO:0006351|GO:0032549
Gma04g00565 1205 Pfam RNA polymerase Rpb2, domain 2 280 424 IPR007642 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 Gene3D - 732 1088 IPR037033 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 Gene3D RNA polymerase alpha subunit dimerisation domain 1089 1203 - -
Gma04g00565 1205 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 39 1202 - -
Gma04g00565 1205 Gene3D RNA polymerase Rpb2, domain 2 256 412 IPR037034 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 CDD RNA_pol_B_RPB2 71 1201 IPR015712 GO:0003899|GO:0006351|GO:0032549
Gma04g00565 1205 Gene3D - 762 951 IPR014724 GO:0003899
Gma04g00565 1205 Pfam RNA polymerase Rpb2, domain 4 600 660 IPR007646 GO:0003677|GO:0003899|GO:0006351
Gma04g00565 1205 MobiDBLite consensus disorder prediction 20 37 - -
Gma04g00565 1205 MobiDBLite consensus disorder prediction 17 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00565 Gma-Chr4 5057807 5063266 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00565 - K16252 gmx:100815934 2400.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00565 04 5057807 5063266 Gma04g00565 04 5057807 5063266 ECH
Gma04g00565 04 5057807 5063266 Gma06g00552 06 4874382 4879569 GST