Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00530 ATGCTTGTCTTGGGAGTGTGGGATCTCAAATGGCTCCTCCAATTCGTATTCTCCGCGTTCGTCTTGGCGATTGGACTGCACGCGCTGCTCAAGAACACCGCCTCCAAGTACTTCGAGATTGAAGCCACTTTCCACGCTATGCCTGGCCCTCTCACCGACCATTCTCTCTGCGCCGTTTGTCGCAACCCCGCCAACAAGAAATGTTCGCGATGCAAATCCGTTCGATACTGTTCACAAGCATGTCAGCAGGCGCACTGGAAATCCGAGCATAAGATGAGATGCAAGGAGTTTCAGGGCAGCGCCAGTGTGATGAATTTGGATCAAACTGAAGTAACTAATCGTGTTTTCAAAGCTTCTGCTGCTGTGAATACAAGTACATCTTCAATTGCCCTCATTCCTGAATGCGGTCGCGGAACATCCAGGACTATCAAGCAGCCTAAAACTGTTATTTATCCGTATGATGAATTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGGCTCAAAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCACTTATTGCCTTTCTATTGGAGAAGGGTCATCACGGAGAATGCTGCCATAGCGATTGGTGCTTTCTGTGTGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTCAGGCATTTTCTCCAATGAATATTCTCTCTCGTTTGCCCAACATCAGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATAAGGTTTGCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGTTGTCCCTCCTAAGCATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACCGAATGTGAAAAGAATTCAAATCAATATGAAAATATGATGGACTTGAACGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAATTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGTTATGTGAAGGCATGGAAACGTCTCACAGTGAAACGAGCTCCAAATATTCTCACAATTGCGTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCTGAGACTTTAGATCTTAGCCCTTACATGAGTGAAGCTGGAGATGGATCTGATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGCCATTACATATGCTTCATCAAAGATTTATGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCTCGAGTGTGGAATTAGAAGAGGTGCTTTCCCAGGGTGCATACATGTTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATTGAATTGTCAGAGACAGCAGAAGTTCAAACAATCAAATCAAAGGTGCAGCCTGGCTGGACTGAACAAGCTGAATGCCTCTCAGATATGAAAAGCGAGACTTACAGTTACAGTAGAGGATATGAGGCTTTTCCATCTGACAGTAGTCCAGAGTTGAAGGTTTCTTGCTGTGAAAGCGTGACTGAAATGAACTCTGAAATTAAAAGAGAGCAGTCTAAGGATGTGGACATTATTGATGTTGCTAGTGAGTCTTTCTGTAATGGTTTTGAAACATCTCATATGCATGATTCTGAAGCTGTCAAAGATTTGGGGGATATAGATTCGGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAATGATAATGATATGGCTAAGTCCAGTCCTTGTCCACATTTGCCAAATGGCTTTTCTTGCTTTGATAAGGATTCTTCTGTTTCAGTGGATTATCAAAATACAAGGGAAGATTCAGGCCATAAAGATGTGACTAAATGCAAGTTAACATCAAATGGCTTTGCAAATTATAGCAATGGATATGGCAGTGCAAATAAATATGATGATGTCCCAGTGGAAGATGGTGATGGATCTTTTTCCACTGAAACACCCTCAGCTAAAATGCATCAATTGAAGGAGAGATTGGCTTCTGAAAATTCTGAAGTTGACAAAGGAAATGGAGTTAAGAAAGTGGAAATATCAGCGAATAATACTCTCTACAATACAAAACCTCCACTTTCAGTTCTACAATATAAGATTGTTCATCAATGGAATGTAATGATCAGCGTGATACTTTCATGGCTCCAAACTTCCACATTCTTTCGCCTCAATTCTGTGTGCAAAAGATGGAAATCAGTAGCTGCTTCTGCCAGTTTCAAGCTTGCCTGCTCTCACATTCCCTCAAGGGAACCTTGGTTTTTAATGGTTGCTCCCAACCTTAACCAATCTGTTATCTTTGACTCTGCTGAAAGCACTTGGAAGAGACTAAATCACCCCTCTCTTCTGCAAGAAGAATCTAACCAAGATTGCATGCCAGTTGCGGCTTCCGGGGGCTTGATTTGCTACCGTAAATCATCAGGAAACTTCATTGTAACCAACCCTGTGACTGGATCTTGTAGAGAACTCCCTCCACTGCAACTTGCCTCACAAAACCAACCACTCGATGCCATCGTGATGAGCACAAGTTCCAAAGACCAAATCTCCTTCAAAATTGTGCTAGTCTTTGGTGAACTTCCAAATCTCTTGTTTAAAGTGTACAATTCAGGTTCTAACTGTTGGGAGGGTGAGACTGCATTGAGGAGAAAGACTGAAGACAATTCCATGGAATATGATTCCACTGATGACAATGTTGTGTACTTCCTCAGCAAGGCTGGAATTGTTGTGGCAAGCAACATGCAGAGAAGCCCCTCCAAGCAATTTTCATCTGTTATTACTAATAAAAATGATCAAGAGATTGTGTATTTTCTTAGTTACTCAGGGAATGTAGTAGCTTGCAATTTGACATGCAAGTGCTTCTCTGAGTACCCCAGGTTGTTGCCTGTTTACAATGAGTATTCCATTGATGTTGTGGAGTGCAATGGGGAGATGCTAGTTGTTTTGCTATCAGAATTCTTGGAAACCACAACCCTTAGGGTGTGGAAATATGATGAGGCTAATAGAGGGTGGCATCAGATTGCAGCAATGCCTGCAGCAAATTCTCATGAGTGGTATGGGAAGAAAGCAGATATTAACTGTGTTGGTGCTGGTAACCAAATCTTCATATGCTTGAACTCCACTGAGCTATGCACTTATGTTATGTGTGATTTGGAGACCAACAAGTGGGTTGAATTGCCAAATTGTTGCATAAATGGACAAGTCATAGACTTTATGTCTGCCTTTTCATTTGAGCCTCGGATAGAGGCTTCAGTGTGA 3393 0.4185 MLVLGVWDLKWLLQFVFSAFVLAIGLHALLKNTASKYFEIEATFHAMPGPLTDHSLCAVCRNPANKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQGSASVMNLDQTEVTNRVFKASAAVNTSTSSIALIPECGRGTSRTIKQPKTVIYPYDEFVKLFNWDKPGFPPCGLKNCGNSCFANVVLQCLSFTRPLIAFLLEKGHHGECCHSDWCFLCEFETHVEKVRLSSQAFSPMNILSRLPNISGTLGYGRQEDAHEFIRFAIDAMQSVCLDEFGGEKVVPPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLNVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEAGDGSDIYKLYAVVVHIDMLNASFFGHYICFIKDLCGNWYRIDDWKVSSVELEEVLSQGAYMLLYSRVNARPSGLQSIELSETAEVQTIKSKVQPGWTEQAECLSDMKSETYSYSRGYEAFPSDSSPELKVSCCESVTEMNSEIKREQSKDVDIIDVASESFCNGFETSHMHDSEAVKDLGDIDSDGSNTCSSVLEEISVCMEEQDDNDNDMAKSSPCPHLPNGFSCFDKDSSVSVDYQNTREDSGHKDVTKCKLTSNGFANYSNGYGSANKYDDVPVEDGDGSFSTETPSAKMHQLKERLASENSEVDKGNGVKKVEISANNTLYNTKPPLSVLQYKIVHQWNVMISVILSWLQTSTFFRLNSVCKRWKSVAASASFKLACSHIPSREPWFLMVAPNLNQSVIFDSAESTWKRLNHPSLLQEESNQDCMPVAASGGLICYRKSSGNFIVTNPVTGSCRELPPLQLASQNQPLDAIVMSTSSKDQISFKIVLVFGELPNLLFKVYNSGSNCWEGETALRRKTEDNSMEYDSTDDNVVYFLSKAGIVVASNMQRSPSKQFSSVITNKNDQEIVYFLSYSGNVVACNLTCKCFSEYPRLLPVYNEYSIDVVECNGEMLVVLLSEFLETTTLRVWKYDEANRGWHQIAAMPAANSHEWYGKKADINCVGAGNQIFICLNSTELCTYVMCDLETNKWVELPNCCINGQVIDFMSAFSFEPRIEASV 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00530 1130 ProSiteProfiles Zinc finger MYND-type profile. 57 94 IPR002893 -
Gma06g00530 1130 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 170 476 IPR028889 -
Gma06g00530 1130 SUPERFAMILY Kelch motif 806 1107 IPR015915 GO:0005515
Gma06g00530 1130 Pfam Ubiquitin carboxyl-terminal hydrolase 170 473 IPR001394 GO:0004843|GO:0016579
Gma06g00530 1130 Pfam MYND finger 57 94 IPR002893 -
Gma06g00530 1130 SUPERFAMILY Cysteine proteinases 166 485 IPR038765 -
Gma06g00530 1130 SUPERFAMILY F-box domain 755 802 IPR036047 GO:0005515
Gma06g00530 1130 Gene3D - 50 99 - -
Gma06g00530 1130 CDD Peptidase_C19E 169 474 - -
Gma06g00530 1130 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 171 186 IPR018200 GO:0004843|GO:0006511
Gma06g00530 1130 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 706 - -
Gma06g00530 1130 Gene3D Cysteine proteinases 166 483 - -
Gma06g00530 1130 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 18 706 - -
Gma06g00530 1130 SUPERFAMILY HIT/MYND zinc finger-like 53 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00530 Gma-Chr6 4522681 4533580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00530 8 481 Miscellaneous Gene Families AT4G31670 65.417 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00530 K11855 - gmx:100817913 1511.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00540 04 4846669 4850251 Gma06g00530 06 4522681 4533580 GST