Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00521 ATGCACTTGCGACTTCGAGCAGCCACTTCCACTGCGAACCCATTCATCCCACCCGCTCACCTCATCCACTCCATCCCTCAATGGTTCTCCATCCTCCGCCACGCCATCGCCGCCTCCGACTTACCCCTCGGAAAGCGCGCCCACGCCCGCATCCTAACTTCCGGCCACCACCCCGACCGCTTCCTCACCAACAACCTCATCACCATGTACTCTAAATGCGGCTCCCTCTCCTCCGCCCGCAAACTGTTCGACACAACGCCCGACACAAGCCGTGATCTTGTTACCTGGAACGCCATCCTCTCCGCCCACGCCGACAAAGCGCGCGACGGCTTCCACCTCTTCCGCCTCCTCCGCCGCTCCTTCGTCTCCGCCACGCGCCACACTCTCGCCCCCGTCTTCAAAATGTGCCTCCTCTCCGCCTCCCCCTCCGCCGCCGAGTCCCTCCACGGCTACGCCGTCAAGATCGGCTTACAATGGGACGTGTTTGTCGCCGGTGCTTTGGTCAACATTTACGCCAAATTCGGACGAATCAGAGAGGCACGCGTTCTGTTCGATGGAATGGGTTTGAGGGACGTTGTTCTCTGGAACGTCATGATGAAAGCTTACGTCGACACTGGTCTCGAATACGAAGCGCTGCTTCTCTTCTCTGAGTTTAACCGAACTGGACTCCGTCCCGATGACGTCACTCTCTGTACTCTCGCGCGGGTTGTGAAAAGTAAACAAAATGTTTTGGAATGGCAGTTGAAGCAGCTTAAAGCTTATGGAACGAAGTTGTTTATGTATGATGATGATGATGATGGTTCGGATGTTATTGCATGGAACAAGACACTGTCTTGGTTTCTTCAGAGAGGTGAAACTTGGGAAGCTGTTGATTGTTTTGTGGATATGATTAACTCGCGTGTTGCCTGTGATGGCTTGACTTTTGTTGTGATGCTGTCTGTGGTTGCCGGTTTGAACTGTCTTGAGCTGGGGAAACAGATTCACGGCATTGTTGTGAGGTCTGGGTTGGATCAAGTTGTCTCTGTTGGGAATTGCCTTATCAATATGTATGTTAAGACTGGCTCCGTTTCTCGTGCAAGGACAGTGTTTTGGCAAATGAATGAAGTGGATTTGGTATCGTGGAACACCATGATATCTGGTTGCGCGCTGAGTGGTTTGGAGGAGTGTTCTGTTGGGATGTTTGTTGATTTATTACGTGGTGGTTTATTGCCGGATCAATTCACTGTTGCGAGCGTTTTGAGGGCTTGTTCCTCTCTTGGAGGAGGTTGCCATCTTGCCACACAGATTCATGCTTGTGCAATGAAAGCTGGTGTTGTCTTGGATTCATTTGTTTCAACAACTCTGATTGATGTGTATTCCAAGAGTGGGAAGATGGAGGAGGCGGAATTTCTTTTTGTTAACCAAGATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGATACATTGTGAGTGGTGATTTTCCTAAGGCATTGAGGCTTTACATTTTAATGCAAGAAAGTGGAGAGAGAGCGAATCAGATTACTCTGGCGAATGCGGCTAAAGCTGCTGGGGGATTAGTGGGGCTTAAACAAGGGAAGCAAATTCAGGCTGTTGTTGTGAAAAGGGGGTTTAATTTAGATTTGTTTGTCATTAGTGGTGTTCTTGACATGTATCTAAAATGTGGAGAGATGGAAAGCGCACGGAGAATTTTCAATGAAATACCTTCGCCTGATGATGTTGCTTGGACTACTATGATATCAGGATGTGTGGAGAATGGACAAGAGGAGCATGCTCTTTTCACGTACCATCATATGAGACTTTCCAAGGTGCAGCCTGATGAGTATACCTTTGCTACCCTTGTCAAGGCTTGCTCTCTTTTAACGGCATTGGAACAAGGGAGACAGATTCATGCAAATACTGTAAAGCTAAACTGTGCATTTGATCCTTTTGTAATGACCTCACTTGTTGACATGTATGCTAAGTGTGGGAATATAGAAGACGCACGTGGTTTGTTTAAAAGAACAAACACGAGTAGGATTGCCTCATGGAATGCCATGATAGTAGGATTAGCTCAACATGGAAATGCTGAGGAAGCCCTTCAGTTTTTCGAAGAGATGAAATCTAGGGGAGTAACACCAGATAGAGTTACTTTTATAGGGGTTCTTTCTGCGTGCAGTCACTCTGGTTTGGTATCTGAAGCCTATGAGAATTTTTATTCCATGCAGAAAATCTATGGTATTGAACCTGAGATTGAGCACTATTCTTGTCTTGTTGATGCCCTTAGCCGTGCAGGGCGGATACGAGAAGCTGAAAAGGTGATATCATCAATGCCTTTTGAAGCTTCTGCTTCAATGTATAGAACACTGCTTAATGCTTGTAGGGTTCAGGTAGACAGAGAAACAGGAAAGCGTGTAGCAGAAAAGCTTTTGGCCTTGGAGCCATCTGATTCAGCTGCTTATGTTCTTTTATCCAATGTTTATGCGGCTGCTAACCAATGGGAAAATGTGGCGAGTGCTAGAAATATGATGAGAAAAGCAAATGTGAAGAAGGATCCAGGGTTTAGTTGGGTAGATTTGAAGAACAAGGTGCATTTGTTTGTAGCTGGTGATAGGTCACATGAAGAAACTGATGTTATATATAATAAGGTGGAGTATATCATGAAGAGGATCAGAGAAGAAGGATATCTCCCTGACACAGACTTCGCACTTGTtgatTGTGCCAATGAGTTTGTGTGTACAGCCTCAGACTCAAAACCTAATGAAATTATGTTCTGGCTCGACTTGATGCTATTGCCACTAGTTTGTTCAATCTGGGGGGATGACTCGGGCTTGGCTCTTGGTACAAGGAGTGTGGCCAGATGGATGCACCCTCCTCAGGGGCGGTTGAAACTAAATTGCGATGCATCTGTGAGTTTGAAATTCTTCTGCTTTCATTGCCAAGAGGTCTGA 2934 0.4663 MHLRLRAATSTANPFIPPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDCANEFVCTASDSKPNEIMFWLDLMLLPLVCSIWGDDSGLALGTRSVARWMHPPQGRLKLNCDASVSLKFFCFHCQEV 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00521 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Gma06g00521 977 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 220 904 - -
Gma06g00521 977 PANTHER - 29 235 - -
Gma06g00521 977 Pfam E motif 793 853 IPR046848 -
Gma06g00521 977 Pfam PPR repeat 344 368 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 166 188 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 64 84 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 446 465 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 372 401 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 748 772 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 193 219 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 475 503 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 549 569 IPR002885 -
Gma06g00521 977 Pfam PPR repeat 647 669 IPR002885 -
Gma06g00521 977 Pfam PPR repeat family 676 721 IPR002885 -
Gma06g00521 977 Pfam PPR repeat family 572 619 IPR002885 -
Gma06g00521 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Gma06g00521 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Gma06g00521 977 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 235 - -
Gma06g00521 977 SUPERFAMILY TPR-like 170 831 IPR011990 GO:0005515
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 626 736 IPR011990 GO:0005515
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 19 154 IPR011990 GO:0005515
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 737 895 IPR011990 GO:0005515
Gma06g00521 977 TIGRFAM PPR: pentatricopeptide repeat domain 475 507 IPR002885 -
Gma06g00521 977 TIGRFAM PPR: pentatricopeptide repeat domain 749 772 IPR002885 -
Gma06g00521 977 TIGRFAM PPR: pentatricopeptide repeat domain 575 609 IPR002885 -
Gma06g00521 977 TIGRFAM PPR: pentatricopeptide repeat domain 677 709 IPR002885 -
Gma06g00521 977 PANTHER - 220 904 - -
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 270 419 IPR011990 GO:0005515
Gma06g00521 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 188 253 IPR011990 GO:0005515
Gma06g00521 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 525 625 IPR011990 GO:0005515
Gma06g00521 977 Gene3D Tetratricopeptide repeat domain 420 520 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00521 Gma-Chr6 4423264 4427429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00521 269 898 Glycoside Hydrolase AT3G49170 33.124 9.30e-125 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00521 - - gmx:102661570 1783.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00521 06 4423264 4427429 Gma06g00521 06 4423264 4427429 ECH
Gma04g00530 04 4716727 4721093 Gma06g00521 06 4423264 4427429 GST