Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00530 ATGCACTTGCGACTTCGAGCTGCCACTTCCACTGCAAACCCATTGACCCCACGCGCTCACCTCATCCACTCTCTCCCTCAATGCTTCTCCATCCTCCGCCAGGCCATCGCCGCCTCCGACTTATCCCTCGGAAAGCGCGCCCACGCCCGCATCCTCACGTCCGGCCACCACCCCGACCGCTTCGTCACCAACAACCTCATCACCATGTATGCCAAATGCGGCTCCCTTTCCTCCGCGCGCAAACTGTTCGATACAACGCCCGACACCAACCGTGACCTCGTTACCTGGAACGCCATCCTCTCCGCCCTCGCCGCCCACGCTGACAAATCCCACGACGGCTTCCACCTCTTCCGTCTCCTCCGTCGCTCCGTTGTCTCCACCACGCGCCACACTCTCGCCCCCGTCTTCAAAATGTGCCTCCTCTCAGCTTCCCCCTCCGCCTCCGAGTCCCTCCACGGTTACGCCGTCAAGATCGGATTACAATGGGACGTGTTCGTCGCCGGTGCTCTGGTCAACATATATGCCAAATTTGGACTAATCAGAGAGGCACGCGTTCTGTTCGACGGAATGGCTGTGAGAGACGTTGTTCTCTGGAACGTCATGATGAAGGCTTACGTCGACACATGTCTCGAATACGAAGCGATGCTTCTCTTCTCTGAGTTTCATCGAACTGGATTCCGTCCCGATGACGTCACTCTCCGCACTCTCTCGCGGGTTGTTAAATGTAAGAAAAACATTTTGGAATTGAAGCAGTTTAAAGCTTATGCGACGAAGTTGTTTATGTATGATGATGATGGTTCAGATGTTATTGTGTGGAACAAGGCACTGTCTCGGTTTCTTCAGAGAGGTGAAGCTTGGGAAGCTGTTGATTGTTTTGTGGATATGATAAACTCACGTGTTGCGTGTGATGGCTTGACTTTTGTTGTGATGTTGACTGTGGTTGCCGGTTTGAACTGTCTTGAACTGGGGAAACAGATTCACGGCATTGTCATGAGGTCCGGGTTGGATCAAGTTGTCTCTGTTGGGAATTGCCTTATCAATATGTATGTTAAGGCTGGTTCTGTTTCTCGTGCGAGGTCGGTGTTTGGTCAAATGAATGAAGTGGATTTGATATCGTGGAACACCATGATATCTGGTTGCACGCTGAGTGGTTTGGAGGAGTGTTCTGTTGGGATGTTTGTTCATTTATTACGCGACAGTTTATTGCCAGATCAATTCACTGTTGCAAGCGTTTTGAGGGCTTGTTCGTCTCTTGAAGGAGGTTACTATCTTGCCACACAGATTCATGCTTGTGCAATGAAAGCTGGTGTCGTCTTGGATTCGTTTGTTTCAACTGCTCTGATTGATGTCTATTCCAAGCGTGGGAAGATGGAGGAAGCGGAATTTCTTTTTGTTAACCAAGATGGATTTGATTTGGCTTCGTGGAATGCTATAATGCATGGATACATTGTGAGTGGTGATTTTCCTAAGGCATTGAGGCTTTACATTTTAATGCAAGAAAGTGGAGAGAGATCGGATCAGATTACTCTGGTGAATGCAGCTAAAGCTGCTGGGGGATTGGTGGGGCTTAAACAAGGGAAGCAAATTCACGCTGTTGTTGTGAAAAGGGGTTTTAATTTAGATTTGTTTGTCACTAGTGGTGTTCTTGACATGTATCTAAAATGTGGAGAGATGGAAAGTGCACGCAGAGTTTTCAGTGAAATACCCTCACCTGATGATGTTGCTTGGACTACTATGATATCAGGATGTGTGGAGAATGGACAAGAGGAACATGCTCTTTTCACGTACCATCAGATGAGACTTTCCAAGGTGCAGCCTGATGAGTATACCTTTGCTACCCTTGTCAAGGCTTGCTCTCTTTTAACGGCATTGGAACAAGGGAGACAAATTCATGCAAATATTGTAAAGCTAAACTGTGCTTTTGatccttttgctgtagtgagttgcctaccaatgccatttgaactgcaaaatttgctgaattccgatgagTGA 1995 0.4657 MHLRLRAATSTANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFAVVSCLPMPFELQNLLNSDE 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00530 664 Gene3D Tetratricopeptide repeat domain 268 418 IPR011990 GO:0005515
Gma04g00530 664 Gene3D Tetratricopeptide repeat domain 517 652 IPR011990 GO:0005515
Gma04g00530 664 Gene3D Tetratricopeptide repeat domain 12 143 IPR011990 GO:0005515
Gma04g00530 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Gma04g00530 664 Gene3D Tetratricopeptide repeat domain 419 516 IPR011990 GO:0005515
Gma04g00530 664 Gene3D Tetratricopeptide repeat domain 145 263 IPR011990 GO:0005515
Gma04g00530 664 PANTHER - 29 242 - -
Gma04g00530 664 PANTHER - 249 652 - -
Gma04g00530 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Gma04g00530 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Gma04g00530 664 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Gma04g00530 664 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Gma04g00530 664 TIGRFAM PPR: pentatricopeptide repeat domain 474 504 IPR002885 -
Gma04g00530 664 TIGRFAM PPR: pentatricopeptide repeat domain 343 366 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 343 367 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 445 464 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 64 84 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 196 225 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 371 397 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 169 192 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 548 568 IPR002885 -
Gma04g00530 664 Pfam PPR repeat 474 502 IPR002885 -
Gma04g00530 664 Pfam PPR repeat family 571 618 IPR002885 -
Gma04g00530 664 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 242 - -
Gma04g00530 664 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 249 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00530 Gma-Chr4 4716727 4721093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00530 303 652 Glycoside Hydrolase AT3G49170 27.123 1.91e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00530 - - gsj:114408324 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00530 04 4716727 4721093 Gma04g00530 04 4716727 4721093 ECH
Gma04g00530 04 4716727 4721093 Gma06g00521 06 4423264 4427429 GST