LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00461	ATGGCTCTTCTGAGTCGAGCCTCTTCACGCTTCCCTCAGCTGGTTTCCCCTCAAAGGGTAGTTTCACTCCACACAACGCTCCCATCTCTGAACGCATCCCCATCCACAGCCACGCCTACACCATATGCCCCGCCACCGCCTCCGTCCGCTTCCTCTCCCGCCGGCGTTTCGAAGGCGGCGGAGTTCGTGATCTCGAAGGTGGACGATCTGATGAACTGGGCCCGCCGCGGCTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGCGCCGCCCGCTACGATCTCGACCGCTTCGGCATCATTTTCAGGCCCAGCCCTCGCCAGTCTGATTGCATGATCGTCGCCGGCACTCTCACCAACAAGATGGCTCCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAGCCTAGATGGGTCGTCTCAATGGGAAGTTGTGCTAATGGAGGAGGATACTACCATTACTCTTACTCCGTAGTTCGGGGATGTGACAGGATTGTTCCTGTTGACATATATGTTCCAGGCTGTCCTCCAACTGCTGAGGCTTTGCTGTATGGACTCCTCCAGCTGCAGAAAAAGATCAATAGGCGCAAAGACTTCCTCCACTGGTGGACAAAGTGA	642	0.5701	MALLSRASSRFPQLVSPQRVVSLHTTLPSLNASPSTATPTPYAPPPPPSASSPAGVSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTK	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g00461	213	TIGRFAM	nuoB_fam: NADH-quinone oxidoreductase, B subunit	62	203	IPR006138	GO:0008137\|GO:0048038\|GO:0051539
	Gma06g00461	213	PANTHER	NADH DEHYDROGENASE	1	213	-	-
	Gma06g00461	213	Hamap	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK].	54	202	IPR006138	GO:0008137\|GO:0048038\|GO:0051539
	Gma06g00461	213	ProSitePatterns	Respiratory-chain NADH dehydrogenase 20 Kd subunit signature.	169	185	IPR006138	GO:0008137\|GO:0048038\|GO:0051539
	Gma06g00461	213	PANTHER	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	1	213	-	-
	Gma06g00461	213	SUPERFAMILY	HydA/Nqo6-like	61	205	-	-
	Gma06g00461	213	MobiDBLite	consensus disorder prediction	32	55	-	-
	Gma06g00461	213	MobiDBLite	consensus disorder prediction	38	52	-	-
	Gma06g00461	213	Pfam	NADH ubiquinone oxidoreductase, 20 Kd subunit	88	197	IPR006137	GO:0051536
	Gma06g00461	213	Gene3D	-	59	213	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00461	Gma-Chr6	3948017	3950060	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00461	K03940		-	gmx:100802267	391.734

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g00461	06	3948017	3950060	Gma06g00461	06	3948017	3950060	ECH
	Gma04g00467	04	4176947	4179786	Gma06g00461	06	3948017	3950060	GST
	Gma14g00848	14	9100854	9106434	Gma06g00461	06	3948017	3950060	PCT
	Gma06g00461	06	3948017	3950060	Gma14g00848	14	9100854	9106434	PCT