Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00417 ATGCACAAGCAAACGCATACGCATGTGTGGAAGCGGATCAGAGACAGGGAAGCTGGGAAACTGCATGCAAGCCATTTCGCCAACCGCATAAAATGGAATCGCATTTCGCAACTCCAATTATCCAATCACAAAGACATCGTCTCACCTCACAAAGGCGCCATCAACTCCCTTCAGATTGATTCCACGGAGGGAAGATATTTGCTATCCGCCGCCTCCGATGCCTCGGTAGCAGTCTACGACGTCCAACGACCCACCGTTTACGAAGCCGGCGGCGTCATTTCGAAACACAGCTCTATATTTGTCGTTGACAAGCAGCACCAGCAAGCCCATAAATATGCGGTTTCCTCAGCTATATGGTATCCCATTGACACCGGCTTGTTCGTCACTGGCTCATACGATCACCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTAAATTTCAAAATGCCTGGAAAGGTTCATAGGGCTGCAATGTCCAATTTATCAACATCTCACATGCTTATTGCTGCTGCCACTGAGGATGTCCAAGTTCGCCTTTGTGATATTGCTTCCGGAGCCTTTGCTCACACTTTGTCCGGTCACCGTGATGGAGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGCGCTGGCTGTTTCCAAGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCAACCATACTCAATCACTCCATGATAACTAAGGATTCAAGTACAAAATTGAGTGCTGCGCAGAAGAAACATGCTAATGGAAGTGGTAGCAGACAACAACTAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAAATTACATCCAGGAATGTTGTCTACTCAGGATCGTGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCCACAGAGGATGGCATGTATCTACTAAGTGCAGGTTGGTCTGATTCAAGATTGAGGTTGTGGGATGTTGAATCTGGCTGTGACACACTTGTGAACTTCGAAACAGTTCGCCTGCAAGTAAACAAACCTCTTCAACTAGCCACCACTCAAGATTCAACCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACGATATTACGTGGTCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACAAGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGGTCAATGGCTGATGAAATGGACGAAGGACCTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1347 0.4633 MHKQTHTHVWKRIRDREAGKLHASHFANRIKWNRISQLQLSNHKDIVSPHKGAINSLQIDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGVISKHSSIFVVDKQHQQAHKYAVSSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSRTQLGRRPTILNHSMITKDSSTKLSAAQKKHANGSGSRQQLIGRVPSKGPMKQKLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGWSDSRLRLWDVESGCDTLVNFETVRLQVNKPLQLATTQDSTLVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSMADEMDEGPAEDQDNWSS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00417 448 SUPERFAMILY WD40 repeat-like 47 428 IPR036322 GO:0005515
Gma06g00417 448 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Gma06g00417 448 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Gma06g00417 448 PRINTS G protein beta WD-40 repeat signature 214 228 IPR020472 -
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 348 IPR001680 GO:0005515
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 426 - -
Gma06g00417 448 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 11 448 IPR042238 GO:0006283
Gma06g00417 448 Gene3D - 10 429 IPR015943 GO:0005515
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 89 IPR001680 GO:0005515
Gma06g00417 448 Pfam WD domain, G-beta repeat 391 426 IPR001680 GO:0005515
Gma06g00417 448 Pfam WD domain, G-beta repeat 192 227 IPR001680 GO:0005515
Gma06g00417 448 Pfam WD domain, G-beta repeat 307 339 IPR001680 GO:0005515
Gma06g00417 448 Pfam WD domain, G-beta repeat 122 140 IPR001680 GO:0005515
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 149 IPR001680 GO:0005515
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 229 - -
Gma06g00417 448 ProSitePatterns Trp-Asp (WD) repeats signature. 326 340 IPR019775 -
Gma06g00417 448 ProSitePatterns Trp-Asp (WD) repeats signature. 214 228 IPR019775 -
Gma06g00417 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 426 IPR001680 GO:0005515
Gma06g00417 448 SMART WD40_4 40 80 IPR001680 GO:0005515
Gma06g00417 448 SMART WD40_4 95 140 IPR001680 GO:0005515
Gma06g00417 448 SMART WD40_4 387 426 IPR001680 GO:0005515
Gma06g00417 448 SMART WD40_4 187 227 IPR001680 GO:0005515
Gma06g00417 448 SMART WD40_4 296 339 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00417 Gma-Chr6 3579404 3582931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00417 105 234 Miscellaneous Gene Families AT5G08390 25.758 4.92e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00417 K10570 - gmx:100790433 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00417 06 3579404 3582931 Gma06g00417 06 3579404 3582931 ECH
Gma04g00427 04 3710990 3714301 Gma06g00417 06 3579404 3582931 GST