Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00427 ATGCATAAGCAAACGCATAGGCATGTGTGGAAGCGGATCAGAGACAGGGAAGCTGGGAAATTGCGTGCAAACCATTTCGCGAACCGCATAAAATCCAATCGCATTTCGCAACTCCAGTTGTCCAATCACAAAGACATTGTCTCACCTCACAAAGGCGCCATCAACTCCCTTCAGGTTGATTCGACAGAGGGAAGATATTTGCTATCCGCTGCCTCCGATGCCTCGGTAGCAGTGTACGACGTCCAACGACCCACCGTTTACGAAGCAGGCGGCGGCGGCGGCGGCGGCATATCGAAACACAGCTCCATATTTGTCGTTGACAAGCAGCATCAGCAAGGCCATAAATATGCGGTGTCCACAGCTATTTGGTATCCCATTGACACTGGCTTGTTCGTCACTGGCTCTTACGATCATCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTTCATAGGGCTGCAATGTCCAATTTGTCAACGTCTCACATGCTTATTGCTGCTGCCACTGAGGATGTCCAAGTTCGCCTTTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCCGGTCACCGTGATGGAGTTATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGCGCTGGCTGTTTCCAAGTTTTAGATCAATCTCAGACTCAGCTTGGAAGACGCCCACCTATACTCAAACGCTCCATGATAACTAAGGATTCAAGTACAAAATTGCGTGCTGCTCAGAAGAAACATGCTAATGGAAGTGGTAGCAGACAACAACCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGATTACATCCAGGAATGTTGTCTACTCAGGATCGTGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCGACTGAGGATGGCATGTATCTACTAAGTGCAGGTTGGTCTGATTCTAGATTGAGGTTGTGGGATGTTGAATCTAGCTGCAACACACTTGTGAACTTTGAAACAGTTCGTCTGCAAATAAACAAACCTCTTCAACTAGCCACCACTCAAGATTCAGCCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACGATATTGCGTGGTCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACATGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAATCGCTGATGAAATGGAAGGAACTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1356 0.4661 MHKQTHRHVWKRIRDREAGKLRANHFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGWSDSRLRLWDVESSCNTLVNFETVRLQINKPLQLATTQDSALVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQHDQELYTGGNDRQILVWSPARSIADEMEGTAEDQDNWSS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 240 IPR001680 GO:0005515
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 233 - -
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 111 153 IPR001680 GO:0005515
Gma04g00427 451 Pfam WD domain, G-beta repeat 311 343 IPR001680 GO:0005515
Gma04g00427 451 Pfam WD domain, G-beta repeat 112 144 IPR001680 GO:0005515
Gma04g00427 451 Pfam WD domain, G-beta repeat 395 430 IPR001680 GO:0005515
Gma04g00427 451 Pfam WD domain, G-beta repeat 196 231 IPR001680 GO:0005515
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 89 IPR001680 GO:0005515
Gma04g00427 451 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Gma04g00427 451 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Gma04g00427 451 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Gma04g00427 451 SUPERFAMILY WD40 repeat-like 47 432 IPR036322 GO:0005515
Gma04g00427 451 SMART WD40_4 391 430 IPR001680 GO:0005515
Gma04g00427 451 SMART WD40_4 191 231 IPR001680 GO:0005515
Gma04g00427 451 SMART WD40_4 99 144 IPR001680 GO:0005515
Gma04g00427 451 SMART WD40_4 300 343 IPR001680 GO:0005515
Gma04g00427 451 SMART WD40_4 40 80 IPR001680 GO:0005515
Gma04g00427 451 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 111 147 - -
Gma04g00427 451 MobiDBLite consensus disorder prediction 267 298 - -
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 430 IPR001680 GO:0005515
Gma04g00427 451 ProSitePatterns Trp-Asp (WD) repeats signature. 218 232 IPR019775 -
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Gma04g00427 451 Gene3D - 10 433 IPR015943 GO:0005515
Gma04g00427 451 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 11 451 IPR042238 GO:0006283
Gma04g00427 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00427 Gma-Chr4 3710990 3714301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00427 50 247 Miscellaneous Gene Families AT5G08390 19.635 4.08e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00427 K10570 - gmx:100815581 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00427 04 3710990 3714301 Gma04g00427 04 3710990 3714301 ECH
Gma04g00427 04 3710990 3714301 Gma06g00417 06 3579404 3582931 GST