Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00393 ATGATCTCAATCACTTCTACTGAATTGAACTACTTAGTCTTCCGTTACCTCCACGAATCAGGCTCGTCCTTCCCCTATTCATTTTCCTTTCTCGCACATTACATTACAATATTACATTACATGCTCATCAATATCAACATCTATTTCGGATACTATGCAGCAACTCTTCCATTTTCTTCACAATTACATCACTCTATACCGAAATTTTTTATCTTCACTATTTGCCAACGTGTTTCTCTCTTTAGACCGTATTATGATGGTTTCTACAAAGTTCGTAGATTCGGTTTTACTCATTCTGCATTTGCATTCGGGTATGAAGCTGGGATTGATAAAAGCAAAAATGATGATAGTGTGGTTCCACCGGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATATCTTGAGCTGGAAGCAAACTTGAGTGGTAGTGATGCTGACATGGATGAGGATTTTTCATTTCTACAACCTCTGGATCTTATCACAAAGGGCCCAAGTGAACTACACAATATAGTGAAAGCCAGAAAGGAAAATCTACGTCAGCATAAATTTGAATCAAATAAAATAATAAATGACTTGAGTCAGGATGACCCAAGGAGGGAGGAAACTGAGAAAGAGAGGAAAGAAAAGGAAAATGAACACACATTGGAAAAAATTAGGTTAGAGAAAGATAAGGAGCCGCCAAAGCCTGAGTATAAAGAAATACAGCACACCGATCAAAACCATACAGAGAAACCTGAAGATAAGATTACTGTCGAAAATCTAGAAAATAGAGCACAAGGAGGGGCTGAGCCAATGGAGATCTCCCAGAGCCCCATGTCGTCGCCTGATGATACTCCATGTGGTTATGTAAAACTTTTGAAAGGTCATACATCAGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTTGCATCTGGGTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGAGCTTGTGACTCTAGTGTGCAAAATGAACCAGTAAATGTTGTGGTGCTGCAGCACTTCAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGGGAGTTGAATTGTACACTAAACAAGCACAGAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTATGGAATATAAAGACTGTGGAATGGAAACAACTATTTGAATTTCACACCGGCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGAGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGACCCATCAGGTTCTTTGCTGGCTTCCTGCTCCGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAATCAGCAGCTAGTACTAGCAAGTGCCTCATTCGACTCAACAATAAAGCTCTGGGATGTGGAACTAGGGAATGTACTCTACAGCTTAAATGGCCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGGGAGTACCTGGCCAGTGGCTCCATGGATAGATACCTGCATATATGGTCCGTGAAGGAGGGCAAGATTGTAAAAACATACACTGGAAAAGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTTCGGATGTAA 1920 0.4052 MISITSTELNYLVFRYLHESGSSFPYSFSFLAHYITILHYMLININIYFGYYAATLPFSSQLHHSIPKFFIFTICQRVSLFRPYYDGFYKVRRFGFTHSAFAFGYEAGIDKSKNDDSVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKGPSELHNIVKARKENLRQHKFESNKIINDLSQDDPRREETEKERKEKENEHTLEKIRLEKDKEPPKPEYKEIQHTDQNHTEKPEDKITVENLENRAQGGAEPMEISQSPMSSPDDTPCGYVKLLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGACDSSVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNCTLNKHRGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTVEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPSGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGNVLYSLNGHRDPVYSVAFSPNGEYLASGSMDRYLHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00393 639 MobiDBLite consensus disorder prediction 183 252 - -
Gma06g00393 639 Gene3D - 2 164 - -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 378 - -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 422 IPR001680 GO:0005515
Gma06g00393 639 PANTHER WD40 REPEAT PROTEIN 4 639 IPR045183 GO:0003714|GO:0016575
Gma06g00393 639 SUPERFAMILY WD40 repeat-like 282 637 IPR036322 GO:0005515
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 604 IPR001680 GO:0005515
Gma06g00393 639 Pfam WD domain, G-beta repeat 385 419 IPR001680 GO:0005515
Gma06g00393 639 Pfam WD domain, G-beta repeat 285 319 IPR001680 GO:0005515
Gma06g00393 639 Pfam WD domain, G-beta repeat 465 502 IPR001680 GO:0005515
Gma06g00393 639 Pfam WD domain, G-beta repeat 508 553 IPR001680 GO:0005515
Gma06g00393 639 Pfam WD domain, G-beta repeat 350 378 IPR001680 GO:0005515
Gma06g00393 639 Pfam WD domain, G-beta repeat 557 595 IPR001680 GO:0005515
Gma06g00393 639 Gene3D - 277 639 IPR015943 GO:0005515
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 378 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 280 319 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 556 595 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 422 460 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 380 419 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 598 636 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 505 553 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 463 502 IPR001680 GO:0005515
Gma06g00393 639 SMART WD40_4 335 378 IPR001680 GO:0005515
Gma06g00393 639 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 639 - -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 563 600 - -
Gma06g00393 639 Coils Coil 200 225 - -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 511 IPR001680 GO:0005515
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 470 504 - -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 328 IPR001680 GO:0005515
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 562 IPR001680 GO:0005515
Gma06g00393 639 ProSitePatterns Trp-Asp (WD) repeats signature. 540 554 IPR019775 -
Gma06g00393 639 ProSitePatterns Trp-Asp (WD) repeats signature. 406 420 IPR019775 -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 287 320 - -
Gma06g00393 639 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 422 - -
Gma06g00393 639 CDD WD40 287 595 - -
Gma06g00393 639 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Gma06g00393 639 PRINTS G protein beta WD-40 repeat signature 540 554 IPR020472 -
Gma06g00393 639 PRINTS G protein beta WD-40 repeat signature 582 596 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00393 Gma-Chr6 3393008 3399298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00393 467 637 Miscellaneous Gene Families AT5G08390 30.058 5.74e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00393 K04508 - gmx:100792917 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00393 06 3393008 3399298 Gma06g00393 06 3393008 3399298 ECH
Gma04g00407 04 3527994 3534131 Gma06g00393 06 3393008 3399298 GST