Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00407 ATGATCTCAATCACTTCTACTGAATTGAACTACTTAGTCTTCCGTTACCTCCACGAATCAGGTTTTACTCATTCTGCATTTGCATTCGGGTATGAAGCAGGGATTGATAAAAACAAAAATGATGATAGTGTGGTTCCACCGGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAGTATCTTGAGCTGGAAGCAAACTTGAGTGGTAGTGATGCTGACATGGATGAGGATTTTTCATTTCTACAACCTCTGGATCTTATCACAAAGGGCCCGACTGAACTACACAATATAGTAAAAGCCAAAAAGGAAAATCTACGTCAGCATAAATTTGAATCAAATAAAATAATGAATGACTTGAGTCAGGATGACTCAAGGAGGGAACGAGTTCAGGAAACAGACAAAGAGATGAAAGAAAAGGAAAATGAACACAGACTGGAAAAAATTAGGTTAGAGAAAGAGAAGGAGCAACCAAAGCTTGAGTATAAAGAAACACAACACATTGATCAAAACCATACAGAGAAACAAGAAGATAAGATTACTGTCGAAAATCTAGAAAATAGAGCACAAGGAGGGGCTGAGCCAATGGAGATCTCACAGAGCTCTATGTTGTCGCCTGATGATACTCCATGCAGTGATGTAAAACTTTTGAAAGGCCATACATCAGAGGTTTTTGCTTGTGCTTGGAATCCATCAGCTCCACTTCTTGCGTCTGGGTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGAACTTGTGACTCTAGTGTGCAAAATGAACCAGTAAATGTTGTGGTGCTGCAGCACTTTAAAGAAAGCACCAATGAGAAAAGCAAGGATGTGACAACACTGGACTGGAATGGGGATGGAACACTGTTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTATAGATGGGGAGTTGAATTGTACACTAAACAAGCACAGAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTATGGAATATAAAGACTGGGGAATGGAAACAACTATTTGAATTTCACACTGGCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGAGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCATCAGGTTCTTTGTTGGCTTCCTGCTCCGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATAATTTGAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAATCAGCAGTTAGTACTAGCAAGTGCCTCATTCGACTCAACAATAAAGCTCTGGGATGTGGAACTAGGGAGTGTACTGTACACCTTAAATGGCCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGAGAGTACCTGGCCAGTGGCTCCATGGATAGATACCTGCATATATGGTCCGTGAAGGAGGGCAAGATTGTAAAAACATACACTGGAAAAGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTCTGTGTTATGGATTTCCGAATGTAA 1707 0.4066 MISITSTELNYLVFRYLHESGFTHSAFAFGYEAGIDKNKNDDSVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKGPTELHNIVKAKKENLRQHKFESNKIMNDLSQDDSRRERVQETDKEMKEKENEHRLEKIRLEKEKEQPKLEYKETQHIDQNHTEKQEDKITVENLENRAQGGAEPMEISQSSMLSPDDTPCSDVKLLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGTCDSSVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSIDGELNCTLNKHRGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTGEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPSGSLLASCSDDHTAKIWSLKQDNFLHNLKEHVKGIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGSVLYTLNGHRDPVYSVAFSPNGEYLASGSMDRYLHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVMDFRM 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00407 568 Coils Coil 129 156 - -
Gma04g00407 568 SMART Lish 5 37 IPR006594 GO:0005515
Gma04g00407 568 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 529 - -
Gma04g00407 568 Pfam WD domain, G-beta repeat 214 248 IPR001680 GO:0005515
Gma04g00407 568 Pfam WD domain, G-beta repeat 437 482 IPR001680 GO:0005515
Gma04g00407 568 Pfam WD domain, G-beta repeat 487 524 IPR001680 GO:0005515
Gma04g00407 568 Pfam WD domain, G-beta repeat 394 431 IPR001680 GO:0005515
Gma04g00407 568 Pfam WD domain, G-beta repeat 279 307 IPR001680 GO:0005515
Gma04g00407 568 Pfam WD domain, G-beta repeat 314 348 IPR001680 GO:0005515
Gma04g00407 568 MobiDBLite consensus disorder prediction 111 142 - -
Gma04g00407 568 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
Gma04g00407 568 PRINTS G protein beta WD-40 repeat signature 469 483 IPR020472 -
Gma04g00407 568 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 353 - -
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Gma04g00407 568 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Gma04g00407 568 ProSitePatterns Trp-Asp (WD) repeats signature. 335 349 IPR019775 -
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 309 - -
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 309 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 264 307 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 351 389 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 527 565 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 434 482 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 485 524 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 309 348 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 392 431 IPR001680 GO:0005515
Gma04g00407 568 SMART WD40_4 209 248 IPR001680 GO:0005515
Gma04g00407 568 Gene3D - 205 568 IPR015943 GO:0005515
Gma04g00407 568 PANTHER WD40 REPEAT PROTEIN 4 568 IPR045183 GO:0003714|GO:0016575
Gma04g00407 568 SUPERFAMILY WD40 repeat-like 212 566 IPR036322 GO:0005515
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 433 - -
Gma04g00407 568 Pfam LisH 8 33 IPR006594 GO:0005515
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515
Gma04g00407 568 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 568 - -
Gma04g00407 568 CDD WD40 216 524 - -
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 491 IPR001680 GO:0005515
Gma04g00407 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 249 - -
Gma04g00407 568 Gene3D - 2 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00407 Gma-Chr4 3527994 3534131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00407 396 566 Miscellaneous Gene Families AT5G08390 32.370 1.15e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00407 K04508 - gmx:100783690 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00407 04 3527994 3534131 Gma04g00407 04 3527994 3534131 ECH
Gma04g00407 04 3527994 3534131 Gma06g00393 06 3393008 3399298 GST