Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00388 ATGGCTGCAGTATATACCTTGTTGTTGATCCTTCTGATCTCTCTTGTTATTTCATCTTCAGCAGTGGACACCATGCATCAAGGTTCATCACTCTCGGTGGAGGAACCAAAAGATTTCATGCTCTCtccaaacggcatgttctcttctggtttctttgccgttggcgaaaacgcatattccttcgCCGTTTGGTATTCCGAACCCTATGGCCAAACACGAAACGCAACCGTCGTATGGATGGCGAACCGTGACCAGCCCGTGAACGGCAAGGGCTCAAAGTTTTCGCTTCTTCACAACGGCAACCTCGCCTTAAACGACGCTGACGAGTCCCACGTTTGGTCCACAAACACCGTTTCACTGTCCTCCTCCGTGCTTCTGTTCCTCGACAACACCGGCAACCTCGTTCTCCGCCAAACGGAGAGTACCGGTGTCGTTTTGTGGCAAAGCTTTGATTTCCCTACAGATACGCTTTTACCTCAACAAGTGTTCACGAGACACGCGAAACTGGTCTCTTCTAGAAGCAAGACAAACAAgtcctcgggtttctacactttgttcttcgacaacgacaacattcttcgtcttctttacgatggtcctgaagtttctggcctttactggccagatccatggctggcatcttggaacgctGGAAGATCCACTTACAACAACAGCAGAGTTGCGGTGATGGACACGCTCGGCAATTTTAGTTCTTCAGATGATTTACATTTTTTGACATCTGATTACGGCAAAGTCGTCCAAAGAAGATTGACCATGGATAACGATGGAAACATTCGTGTTTATAGCCGGAGACACGGTGGAGAGAAATGGTCTATTACGTGGCAAGCCAAAGCAAGACCGTGTAACATTCATGGTATTTGTGGCCCAAATAGTTTGTGCTCTTATCATCAAAATTCTGGTATAGAATGCTCTTGTCTTCCCGGGTATAAGTGGAAGAACGTAGCCGATTGGTCTTCTGGGTGTGAACCGAAATTCTCTATGCTTTGCAACAAAACCGTGTCTCGATTTTTATATATAAGCAACGTGGAGTTGTATGGCTATGACTATGCGATCATGACCAATTTCACGCTCAATCAGTGTCAGGAGTTATGCCTTCAATTGTGCAATTGTAAAGGCATCCAATACACCTATGTCTTTGAAAGTGGCACTTATACATGTTACCCGAAGTTGCAGTTGCGGAATGCGTACCGTACACCGTATTTTAATGCTGATTTGTACTTGAAACTCCCGGCAAACAGTTCATATTCTTATGAGGGGTCCACAGAACAGCACGGTCTTGATTGCTCTTCTTCGAGAACGATACAGCTTGAGAGAGCCTATGACATGGGTCATGAAAGCAGATATATTAAGTTCTTATTTTGcgtaACAAAGGATGTTGATGCCACTGATAATGGAGTGGAAAACCTGCATCTCAGCATGGTCGCATGGCTTAAAGAGAAAGACAAAAATGGATCTGGGTGCGTTAGTGAAATCTTGGACCCAACAGTAGAAGGAGGTTATGACGAGGGTAAGATGAAAGCTTTGGCTAGAGTGGCCCTGCAGTGCGTAAAGGAAGAGAAGGACAAGAGACCCACCATGAGTCAAGTAGTAGAGATACTTCAGAAATCTAGCCGCGAAAATGATCATCAGTGA 1653 0.4017 MAAVYTLLLILLISLVISSSAVDTMHQGSSLSVEEPKDFMLSPNGMFSSGFFAVGENAYSFAVWYSEPYGQTRNATVVWMANRDQPVNGKGSKFSLLHNGNLALNDADESHVWSTNTVSLSSSVLLFLDNTGNLVLRQTESTGVVLWQSFDFPTDTLLPQQVFTRHAKLVSSRSKTNKSSGFYTLFFDNDNILRLLYDGPEVSGLYWPDPWLASWNAGRSTYNNSRVAVMDTLGNFSSSDDLHFLTSDYGKVVQRRLTMDNDGNIRVYSRRHGGEKWSITWQAKARPCNIHGICGPNSLCSYHQNSGIECSCLPGYKWKNVADWSSGCEPKFSMLCNKTVSRFLYISNVELYGYDYAIMTNFTLNQCQELCLQLCNCKGIQYTYVFESGTYTCYPKLQLRNAYRTPYFNADLYLKLPANSSYSYEGSTEQHGLDCSSSRTIQLERAYDMGHESRYIKFLFCVTKDVDATDNGVENLHLSMVAWLKEKDKNGSGCVSEILDPTVEGGYDEGKMKALARVALQCVKEEKDKRPTMSQVVEILQKSSRENDHQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00388 550 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 464 545 - -
Gma06g00388 550 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 208 IPR036426 -
Gma06g00388 550 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Gma06g00388 550 Pfam S-locus glycoprotein domain 244 319 IPR000858 GO:0048544
Gma06g00388 550 SMART blect_4 28 153 IPR001480 -
Gma06g00388 550 Gene3D Transferase(Phosphotransferase) domain 1 458 550 - -
Gma06g00388 550 Gene3D - 153 280 IPR036426 -
Gma06g00388 550 CDD B_lectin 41 153 IPR001480 -
Gma06g00388 550 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 6 467 - -
Gma06g00388 550 CDD PAN_AP_plant 337 417 - -
Gma06g00388 550 SMART ntp_6 338 416 IPR003609 -
Gma06g00388 550 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 467 - -
Gma06g00388 550 Pfam PAN-like domain 336 393 IPR003609 -
Gma06g00388 550 Pfam D-mannose binding lectin 76 168 IPR001480 -
Gma06g00388 550 ProSiteProfiles Bulb-type lectin domain profile. 22 149 IPR001480 -
Gma06g00388 550 Gene3D - 16 151 IPR036426 -
Gma06g00388 550 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 464 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00388 Gma-Chr6 3354034 3356451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00388 468 540 Receptor kinase-like Gene Family AT3G58690 37.662 4.90e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00388 - - gmx:100792388 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00388 06 3354034 3356451 Gma06g00388 06 3354034 3356451 ECH
Gma04g00401 04 3477118 3479448 Gma06g00388 06 3354034 3356451 GST