Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00199 ATGCAGCAAGGAGACTACACCTCCGCTCCATCTCCATATTATCAATTCCCTCATCTCCAAAACcccaatcccaatcccaatcccaatcccgatccACACCCAAACAACCCTTACGCTTCTGCACCTCCCTTCACCCCCAATTACGCTCCCTCCGATTACACCCCTTACCCTTCCTACCCTCAAAATCCCGATCCTTCTCCACCCACTGCTCCTTCCTTTCCTCCCTCTTCTTCCAACCCTAATTTACCCCCTCCTTTCAATCCTCCCTTCGAATCTAACCCTCCCTACCAACAACAACAACCCTATTTCTCACCATATGATCAGCATCAAACGCCTCCCAACCCCAATTCCACTCCCTCCTCATACAACCCTGTCCCTTCTCCCTACAGCTACTCCGGACCCTCCTCCGTTCCTCCGATTCCGACCTACGAACCTGCATACGAGGCTCCCGTGAGGCCCGATCAAGGTGGAGGCTACTTTGACGACAGGTACCGAGCCGGATTTACTCGGAGCCATTCCGATTTGGGATCCGATTTTTACGGGAAGAGCGGTGGTGGCGCAGATGATGGATACGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTACGGGGCGCGTGGCACGGCGCCAAAATCGTCGACTTGGGCGGCGTTTGATGATTACGGGAGGTCCATCAGTTTCCCCTCGCAGAAGGAATCTTCTTCTGTGGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGCTGATACACAACAAGATGTCAAAGGTGGCGGCGTGCAAAAGTTTCGTGTCAAGCTGTTGGCCGAAAGTGGGGGTCAGAGCACTATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAATACCAGCCGGACATTGAGAATTTATCCTCTTGAGAACATAACAAGATGTGATAGAATCGATTCATCTACCTTTGCATTTTGGTCAAAGAGTCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAGGCAGGAGGCCTGCTGAAGCTGTGAAAACAAATGAACAGTCTTCAGAAAGAAAGAAAGGTTTTGGTGATTGGATGAATCTTATCAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCGGATGAAGCCGTCTCAAAATGTACAGCATGTGGCACTGATTTTGGGGCTTTTGTTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACCCATGGTAGAATTGCTCTGACTGCTGATGAGAATGCTCAGCCTGTACGAGTTTGTGACCGTTGCATGGCTGAAGTGACTCAGCGGCTGACTAGTGCGAAAGAGTCATCAAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCAAAGAAACTTCAGGTTCCAAGTCTGATGGATCTGCAAGACGGATGA 1500 0.4813 MQQGDYTSAPSPYYQFPHLQNPNPNPNPNPDPHPNNPYASAPPFTPNYAPSDYTPYPSYPQNPDPSPPTAPSFPPSSSNPNLPPPFNPPFESNPPYQQQQPYFSPYDQHQTPPNPNSTPSSYNPVPSPYSYSGPSSVPPIPTYEPAYEAPVRPDQGGGYFDDRYRAGFTRSHSDLGSDFYGKSGGGADDGYGDGVYAYEGGKVEPYGARGTAPKSSTWAAFDDYGRSISFPSQKESSSVGGKIVKAVPKADTQQDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRIDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDIVTAATIQFKEMGGGRRPAEAVKTNEQSSERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRRHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLTSAKESSSKPALQSHEDLAKKLQVPSLMDLQDG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00199 499 CDD FYVE_EEA1 400 462 - -
Gma06g00199 499 SUPERFAMILY FYVE/PHD zinc finger 398 470 IPR011011 -
Gma06g00199 499 MobiDBLite consensus disorder prediction 1 16 - -
Gma06g00199 499 MobiDBLite consensus disorder prediction 56 95 - -
Gma06g00199 499 PANTHER PROTEIN FREE1 1 489 - -
Gma06g00199 499 PRINTS Proline rich extensin signature 108 133 - -
Gma06g00199 499 PRINTS Proline rich extensin signature 1 12 - -
Gma06g00199 499 PRINTS Proline rich extensin signature 21 42 - -
Gma06g00199 499 PRINTS Proline rich extensin signature 67 84 - -
Gma06g00199 499 PRINTS Proline rich extensin signature 44 60 - -
Gma06g00199 499 SUPERFAMILY PH domain-like 266 326 - -
Gma06g00199 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 468 IPR013083 -
Gma06g00199 499 PANTHER PROTEIN FREE1 1 489 IPR045893 GO:0036258|GO:0043130
Gma06g00199 499 SMART fyve_4 395 464 IPR000306 GO:0046872
Gma06g00199 499 MobiDBLite consensus disorder prediction 1 155 - -
Gma06g00199 499 Pfam FYVE zinc finger 399 463 IPR000306 GO:0046872
Gma06g00199 499 MobiDBLite consensus disorder prediction 96 116 - -
Gma06g00199 499 MobiDBLite consensus disorder prediction 131 146 - -
Gma06g00199 499 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 403 463 IPR017455 -
Gma06g00199 499 MobiDBLite consensus disorder prediction 17 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00199 Gma-Chr6 1747261 1755928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00199 381 464 EF-hand Containing Proteins AT3G14270 34.694 1.43e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00199 - - gmx:100794840 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00199 06 1747261 1755928 Gma06g00199 06 1747261 1755928 ECH
Gma04g00218 04 1854589 1860275 Gma06g00199 06 1747261 1755928 GST