Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00218 ATGCAGCAAGGAGACTACACCTCCGCTCCATCTCCATATTATCAATTCCCTCATCTCCAAAACCCCAATCCCAATCCCGATCCACACCCAAACAACCCCTACGCTTCTGCACCTCCCTTCACCCCCAATTACGCTCCTTCCGATTACACCCCTTACCCTTCTTCCTACCCTCAAAATCCCGATCCTATTCCACCCACTGCTCCTTCCTTCCCTCCCTCTTCCTCCAACCCTAATTTACCCCCTCCTTTCAATCCTCCCTTCGATTCTAACCCTCCCTACCAACAACCGCAACCACAACAACCCTATTTCCCACCCTATGATCACCATCAAACGCCTCCCAATTACGCCCCTCCCAACACCAATTCCACTCCCTCAGTATACAACTCTGCTCCCTACAGCTACACTGGAGTCTCCTCCGTTCCTCCGATTCCGACGTACGAACCTGCATACGACGCTCCGGTGAGGCCCGATCATGGTGGAGGCTATTTTGACGACAGATACTGCTCTGGATTTACTCGGAGCCATTCCGATTTGGGATCGGATTTTTACGGGAAGAGCGTTGGTGGTGCTTCGAGATATGACGGTGTCGCTGATGATGGATACGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTATGGGGCGCGTGGCACGGCGCCAAAATCGTCGACTTGGGCGGCGTTTGATGATTACGGGAGGTCCATCAGTTTCCCCTCGCAGAAGGAATCTTCTGTGGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGCTGATACACAAGAAGACGTCAAAGGTGGTGGCGTGCAAAAGTTTCGTGTCAAGCTGTTGGCAGAAAGTGGGGGTCAGAGCACCATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGCATGCTGGATCCAAATACCAGCCGGACATTGAGAATTTATCCTCTTGAGAACATAACAAGATGTGATAGAATCGATTCATCTACCTTTGCATTTTGGTCAAAGAGCCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGCAGGTGGCCTGCTGAAGCAGTGAAACCAAATGAACAGCCTACAGAAAGAAAGAAAGGTTTTGGTGATTGGATGAATCTTATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCAGATGAAGCCGTCTCAAAATGTACAGCATGTGGTACTGATTTTGGGGCTTTTGTTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACATATGGTAGAATTGCTCTGACTGCTGATGAGAATGCTCAGCCTGTACGAGTTTGTGACCGGTGCATGGCGGAAGTGTCTCAGCGGCTGACTAGTGCAAAAGAGTCATCAAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCAAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAGACATCAGGTTCCAAGTCTGATGGATCTGCAAGACGGATGAAGGAAGTTGCATGTCCCATTTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCGGGTTCAGAGACAATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGCGCTCATTGA 1674 0.491 MQQGDYTSAPSPYYQFPHLQNPNPNPDPHPNNPYASAPPFTPNYAPSDYTPYPSSYPQNPDPIPPTAPSFPPSSSNPNLPPPFNPPFDSNPPYQQPQPQQPYFPPYDHHQTPPNYAPPNTNSTPSVYNSAPYSYTGVSSVPPIPTYEPAYDAPVRPDHGGGYFDDRYCSGFTRSHSDLGSDFYGKSVGGASRYDGVADDGYGDGVYAYEGGKVEPYGARGTAPKSSTWAAFDDYGRSISFPSQKESSVGGKIVKAVPKADTQEDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRIDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDIVTAATIQFKEMGGSRWPAEAVKPNEQPTERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRRHHCRNCGDIFCDKCTYGRIALTADENAQPVRVCDRCMAEVSQRLTSAKESSSKPALQSHEDLARKLQEELERNRKTSGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00218 557 MobiDBLite consensus disorder prediction 113 127 - -
Gma04g00218 557 MobiDBLite consensus disorder prediction 17 46 - -
Gma04g00218 557 SMART fyve_4 404 473 IPR000306 GO:0046872
Gma04g00218 557 MobiDBLite consensus disorder prediction 1 16 - -
Gma04g00218 557 PRINTS Proline rich extensin signature 16 28 - -
Gma04g00218 557 PRINTS Proline rich extensin signature 30 46 - -
Gma04g00218 557 PRINTS Proline rich extensin signature 51 63 - -
Gma04g00218 557 PRINTS Proline rich extensin signature 64 85 - -
Gma04g00218 557 PRINTS Proline rich extensin signature 85 101 - -
Gma04g00218 557 PRINTS Proline rich extensin signature 109 126 - -
Gma04g00218 557 Pfam FYVE zinc finger 408 472 IPR000306 GO:0046872
Gma04g00218 557 MobiDBLite consensus disorder prediction 53 112 - -
Gma04g00218 557 SUPERFAMILY FYVE/PHD zinc finger 407 478 IPR011011 -
Gma04g00218 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 477 IPR013083 -
Gma04g00218 557 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 412 472 IPR017455 -
Gma04g00218 557 PANTHER PROTEIN FREE1 1 557 IPR045893 GO:0036258|GO:0043130
Gma04g00218 557 SUPERFAMILY PH domain-like 274 335 - -
Gma04g00218 557 MobiDBLite consensus disorder prediction 1 127 - -
Gma04g00218 557 PANTHER PROTEIN FREE1 1 557 - -
Gma04g00218 557 Coils Coil 487 507 - -
Gma04g00218 557 CDD PTB 274 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00218 Gma-Chr4 1854589 1860275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00218 390 473 EF-hand Containing Proteins AT3G14270 34.694 4.96e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00218 - - gmx:100794840 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00218 04 1854589 1860275 Gma04g00218 04 1854589 1860275 ECH
Gma04g00218 04 1854589 1860275 Gma06g00199 06 1747261 1755928 GST