Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00183 ATGGCCCTAGTCCACAAGTATCTTCTTCTCTCCCGGTCGCCGCCGCCGCCAACACGTTTCATTGCTAGTATAAGAACGCCTACTTCACTTCAAACATCGCCACTCATGGCCTTCATAAAACCAAGCGCACGCTTCCGCCACTCACTCTCACCCCTCCTATCCCCCACTTTCAAGCCATATTCTTCTTCAGCTTCGGCCTTAGTTCCCGAACTTGATATTCAACCCGACACTCCCCAGAACCCTAATCTCTCCCCCGAAGAAACAACCTTAGCCGACAAGTTCCACGCCGCAATTAAAGAGCACCACCGCAGAAACCCCACACCCAACCCTAACGCCCCTCCCCCAACTCCCAACCTCACCATCCCCGACCTCTCCCTCGCCTTTTCCGCTATCTCCGCCGCCCACCCAATCTCCCCCTCCGTCGCCCACCGCGTCATCGAGAAATGCGGCGGCGTCCGCCACGGCATCCCCTTCCTCCAATCCCTTGCCTTCTTCAACTGGTCCTCCTCTCTCGACGGCTTCCCCGCCTCGCCGGAGCCCTACAACGAGATGCTCGACCTCGCCGGAAAGTTGAGACAATTCGACCTAGCCTGGCACGTCATCGATCTCATGAAGTCTCGCGGCGTCGAAATCACCGTCCACACGTTCTCCGCCCTCGTCCGCCGCTACGTGAGGGCCGGATTGGCTGCTGAGGCAGTGCACGCGTTTAACCGTATGGAGGACTATGGCTGCACCCCTGATATGGTTGCATTTTCAATTGTAATTAGTAGCTTATGTAAGAAAAGAAGAGCAAATGAGGCTCAATCGTTTTTTGATAGTCTTAAGCATAGGTTTGAGCCTGATGTTGTGGTTTACACTAGCTTGGTTCATGGGTGGTGTCGTGCTGGTGACATATCTAAGGCTGAAGAGGTGTTTAGTGATATGAAGATGGCTGGAATTAAACCTAATGTTTACACTTATAGCATTGTGATTGATTCGTTGTGCCGGTGCGGGCAAATTACGCGTGCTCATGATGTTTTCTCGGAGATGATCGATGCAGGGTGTGATCCTAATGCGGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTTTTGAAGGTTTACAATCAGATGAAGAGGCTTGGTTGTCCTGCTGATACCATTAGCTATAATTTCATCATTGAGAGTCATTGTAGGGATGAGAATCTCGAAGAGGCTGCGAAGATTCTCAATTTGATGGTCAAGAAAGGGGTTGCTCCCAATGCGTCCACTTTCAATTTTATTTTTGGATGCATAGCTAAGTTACATGACGTGAATGGTGCGCATCGGATGTATGCTAGAATGAAGGAGCTGAACTGCCAGCCCAATACGTTGACTTATAATATTTTGATGAGGATGTTTGCTGAGTCAAGGTCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAGTCAGGTTGAACCTAATGTGAATACTTACCGAATTTTGATTTCCATGTTTTGTGATATGAAGCACTGGAACAATGCGTACAAGTTAATGATGGAGATGGTTGAAGAAAAATGCCTAAGACCAAACCTGTCAGTTTATGAAACGGTTCTCGAGCTGCTGAGAAAGGCTGGACAGTTGAAAAAACATGAAGAGTTGGTGGATAAGATGGTTGCGAGGGGGTTTGTCACTCGTCCTTTGTAG 1695 0.4879 MALVHKYLLLSRSPPPPTRFIASIRTPTSLQTSPLMAFIKPSARFRHSLSPLLSPTFKPYSSSASALVPELDIQPDTPQNPNLSPEETTLADKFHAAIKEHHRRNPTPNPNAPPPTPNLTIPDLSLAFSAISAAHPISPSVAHRVIEKCGGVRHGIPFLQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVARGFVTRPL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00183 564 Pfam PPR repeat 353 383 IPR002885 -
Gma06g00183 564 Pfam PPR repeat 181 209 IPR002885 -
Gma06g00183 564 SUPERFAMILY TPR-like 250 461 IPR011990 GO:0005515
Gma06g00183 564 Pfam PPR repeat family 218 260 IPR002885 -
Gma06g00183 564 Pfam PPR repeat family 280 329 IPR002885 -
Gma06g00183 564 Pfam PPR repeat family 455 503 IPR002885 -
Gma06g00183 564 Pfam PPR repeat family 386 431 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 388 422 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 494 526 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 318 352 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Gma06g00183 564 TIGRFAM PPR: pentatricopeptide repeat domain 181 212 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Gma06g00183 564 Gene3D Tetratricopeptide repeat domain 430 562 IPR011990 GO:0005515
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Gma06g00183 564 Gene3D Tetratricopeptide repeat domain 276 344 IPR011990 GO:0005515
Gma06g00183 564 Gene3D Tetratricopeptide repeat domain 157 275 IPR011990 GO:0005515
Gma06g00183 564 Gene3D Tetratricopeptide repeat domain 345 415 IPR011990 GO:0005515
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Gma06g00183 564 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 43 563 - -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 277 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Gma06g00183 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Gma06g00183 564 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00183 Gma-Chr6 1606857 1609669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00183 171 559 Glycosyltransferase AT1G05670 25.897 5.02e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00183 - - gmx:100800850 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00183 06 1606857 1609669 Gma06g00183 06 1606857 1609669 ECH
Gma04g00195 04 1665991 1666449 Gma06g00183 06 1606857 1609669 GST