Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00195 ATGGTCACGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTTTATTTTTGGGTGCATAGCTAAGTTACATGATGTGAATGGTGCGCATTGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCTGCCCAATACATTGACTTATAATATTTTGATGAGGATGTTTGCTAAGTCGAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAATCAGGTTGAACCTAATGTGAATACTTACCGAATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCGTACAAGTTAATGAAGGAGATGGTTGAAGAAAAATGCCTAAGACCAAATCTATCAGTTTATGAATTGGTTCTGGAGCTGCTGAGAAAGGCTGGACATTTGAAAAAGCATGAAGAGTTGGTGGATAAAATGGttgcgagaggatttgtcactcacccttggtag 459 0.3573 MVTKGVAPNASTFNFIFGCIAKLHDVNGAHWMYARMKELKCLPNTLTYNILMRMFAKSRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLMKEMVEEKCLRPNLSVYELVLELLRKAGHLKKHEELVDKMVARGFVTHPW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00195 152 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Gma04g00195 152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Gma04g00195 152 TIGRFAM PPR: pentatricopeptide repeat domain 82 114 IPR002885 -
Gma04g00195 152 TIGRFAM PPR: pentatricopeptide repeat domain 47 80 IPR002885 -
Gma04g00195 152 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 1 151 - -
Gma04g00195 152 Gene3D Tetratricopeptide repeat domain 1 151 IPR011990 GO:0005515
Gma04g00195 152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Gma04g00195 152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Gma04g00195 152 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 151 - -
Gma04g00195 152 Pfam PPR repeat family 43 91 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00195 Gma-Chr4 1665991 1666449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00195 1 148 Miscellaneous Gene Families AT4G11690 27.703 3.87e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00195 - - gmx:100800850 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00195 04 1665991 1666449 Gma04g00195 04 1665991 1666449 ECH
Gma04g00195 04 1665991 1666449 Gma06g00183 06 1606857 1609669 GST