Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00055 ATGGGGAGTAAGAAAAAAAATGGTGGAAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTAGTTGGAAACGAGAAAGTTTTCAGCAACTTTGTGGACCATAAGTTTGATGAATTGGATAAAGACAGAGATGGGAAACTCTCCATGAAGGAGCTTGAACCTGCTGTTGCTGACATTGGTGCTGGTCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATTTATTTTGAGGTCTTGAATGAGTTCACCCATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTTAAAGAGGTTCTCTCAGACATTCTGTTGGGCATGGCTGCTGGACTAAAGCGAGACCCTATTGTTATACTCCGCATGGATGGGGAAGATCTCCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTCTCTCAGATTGAGTCCCCTAGTGGATCCTTTCGTGAACATGTAATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAATTCCTCCAACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTATCTCAAGGTGGCCCTGCTTTGGACAAGCCTGCTTCTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTCGCATTGAGCGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACATTTGATGGACGCGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGACGTTGAACTTAGCTTTAGAGAATCTGCCAAAAGATCGCAATGGAAAAATATCAAAGGACTATCTGCGGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATTGATAAGGTCATTGTTGAAGCCTTTAAGATGGTGAATGCAGAGGACACCAAGACAGTTAAAGAAGACGAATTTAAGAAAATTTTAACTGAAATACTGGGTAGTATCATGTTGCAGTTAGAAGGCAATCCCATATCTGTTTCTTCAAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTTCTAGTGAAACAGCATAA 1104 0.4176 MGSKKKNGGKGEIVDGSKIMELVGNEKVFSNFVDHKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYFEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLLEFVNGPSYEAEMASIFSQIESPSGSFREHVIEAFGRLTVDQGIPPTSDSWVFNNIVDPALSQGGPALDKPASQETFLEEFKKVALSVVDFLKEKPVIVAHSENTFDGRGVKRLLSNKFELDRTLNLALENLPKDRNGKISKDYLRVALDLVSPSAGLPPVGAIEEIDKVIVEAFKMVNAEDTKTVKEDEFKKILTEILGSIMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSSSETA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00055 367 Gene3D - 31 341 - -
Gma06g00055 367 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 4 366 - -
Gma06g00055 367 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 4 366 - -
Gma06g00055 367 Pfam EF-hand domain pair 36 102 IPR002048 GO:0005509
Gma06g00055 367 ProSiteProfiles EF-hand calcium-binding domain profile. 28 63 IPR002048 GO:0005509
Gma06g00055 367 SMART efh_1 32 60 IPR002048 GO:0005509
Gma06g00055 367 SMART efh_1 299 327 IPR002048 GO:0005509
Gma06g00055 367 SMART efh_1 253 281 IPR002048 GO:0005509
Gma06g00055 367 SUPERFAMILY EF-hand 36 338 IPR011992 -
Gma06g00055 367 ProSitePatterns EF-hand calcium-binding domain. 41 53 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00055 Gma-Chr6 483055 486779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00055 10 366 EF-hand Containing Proteins AT4G38810 65.928 1.98e-170 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00055 - - gmx:100787083 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00055 06 483055 486779 Gma06g00055 06 483055 486779 ECH
Gma04g00063 04 502030 508280 Gma06g00055 06 483055 486779 GST