Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00063 ATGATGATTAAGATTTACGTGTATATATATACTTTGTTTGGGGAGCCACGTGTGGGGTTCACAGTTCACACCATTGCTGACAGATACAATAATAATGACCTTCTTCCTTTCCTTCCTCCTGCTCCTCCACTGTGCTTAAACTCATTAATAAACCAAACACAGGCAAAAGAAAAGGGTGTTACTGTGTTAGTGTGTTACCTTTACCACTCAGAAACAATGGAGAGTAAGAGAAAAAATGGTGGGAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTAGTTGGAAACGAGCAAGTTTTCAGCAACTTTGTGGACCATAAGTTTGATGAGTTGGATAAAGACAGAGATGGCAAACTCTCCATGAAGGAGCTTGAACCTGCCGTTGCTGACATTGGTGCTGGTCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTTTGAGGTCTTGAATGAATTCACCCATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCGGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCAAGACCCTATTGTTATACTTCGCATGGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTTTCTCAGATTGAGTCCCCTAGTGGATCCCTTCGTGAACATGTGATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAATTCCTCCAACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTATCTCAAGCTGGCCCTGCTTTGGACAAGCCTGCTGCTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTGAGCGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACATTTGATGGACGCGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGACGTTGAACTTAGCTTTAGAGAATCTGCCGAAAGATCGCAACGTAAAAATATCAAAGGACTATCTGCAGGTGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATTGATAAGGTTATTGTTGAAGCCTTTAAGATGGTGAATGCAGATGACACCAAGACAGTTAAAGAAGACGAATTCAAGAAAATTTTAAGTGAAATACTGGGTAGTATCACGTTACAGTTAGAGGCAAATCCCATATCTGTTTCTTCCAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTAGTGAAACAGCATAA 1320 0.4174 MMIKIYVYIYTLFGEPRVGFTVHTIADRYNNNDLLPFLPPAPPLCLNSLINQTQAKEKGVTVLVCYLYHSETMESKRKNGGKGEIVDGSKIMELVGNEQVFSNFVDHKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYFEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKQDPIVILRMDGEDLLEFVNGPSYEAEMASIFSQIESPSGSLREHVIEAFGRLTVDQGIPPTSDSWVFNNIVDPALSQAGPALDKPAAQETFLEEFKKVALSVVDFLKEKPVIVAHSENTFDGRGVKRLLSNKFELDRTLNLALENLPKDRNVKISKDYLQVVALDLVSPSAGLPPVGAIEEIDKVIVEAFKMVNADDTKTVKEDEFKKILSEILGSITLQLEANPISVSSNSVVHEPLGSSSTLLQPSSETA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00063 439 SMART efh_1 104 132 IPR002048 GO:0005509
Gma04g00063 439 SMART efh_1 372 400 IPR002048 GO:0005509
Gma04g00063 439 Gene3D - 68 187 - -
Gma04g00063 439 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 73 437 - -
Gma04g00063 439 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 73 437 - -
Gma04g00063 439 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Gma04g00063 439 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Gma04g00063 439 SUPERFAMILY EF-hand 108 404 IPR011992 -
Gma04g00063 439 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00063 Gma-Chr4 502030 508280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00063 84 438 EF-hand Containing Proteins AT4G38810 64.903 1.42e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00063 - - gmx:100808079 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00063 04 502030 508280 Gma04g00063 04 502030 508280 ECH
Gma04g00063 04 502030 508280 Gma06g00055 06 483055 486779 GST