Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02389 ATGGGAATTGTTTGCGATCCGTACAAGACCATGGCTGGCCCCAAGCCCAAGTTGTTGTTCCTGATTGTCATCCTCAGTCTCTCTGCCTCCGTCGGCGCCCGCCCCTTCGTCCTTATCCTCTCCCAGGAAGACTACAAGGACGACCCCCCCGCCGATCCCGACTCGCCCGCCGAGTGGGATGAGTTCGCCCACGGAGACGCCCACAAATCCGAGGAGGACCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCTCCCGCCGGAGATCCCCAACCCCTCCCCGAATCCGACGCCGCCTACTACTCCGCCGTCCACAAGCTCATGTCCGGCGAGCCCGCCCTGATCCAGGACGCCGGCGAGGAGATCGCCGGCCTGGCCGTGAGCGGGCACCCTGCGGCGCAATCGGTGCTAGGGTTTTTGTGGGAAATGGGGCTTTTTAGAGAGCGGAGCAAGGGGAAGGCCTTTCTGTACCACCACTTCGCCGCGGAGGGAGGCAACATGCAATCGAAGATGGCATTGGCCTACAGCTACACGAGGCAGGACATGTTGGAGAAAGGTGTAAAGCTGTATGGGGAGTTAGCTGAAGTGGCTGTGAACAGCTTTCTGATATCGAAAGAGTCCCCTGTGATTGAGGCGGTTAGGCTTCACAACGGGGCCGAAGAGAACAAGGAGGCTCTTGGGAAATCGAAGGGGGAAGAGGATGAGGACTTTCAGATACTCGAGTATCAGGCCCAGAAAGGGAATGCTGCTGCCATGTACAAAGTTGGACTCTTTTACTACTTTGGCCTCAGGGGACTGAGGCGCGACCACTCCAAGGCCCTCTGGTGGTTTCTCAAGGCCGTTGAGAAGGGTGAGCCGCGATCCATGGAGCTCCTTGGAGAGATCTATGCCAGAGGAGCAGGTGTTGAGAGAAACTACACCAAGGCATTGGAGTGGCTGACCCTTGCTTCCAGGCACCACCTCTATTCTGCTTACAATGGGATGGGCTATTTGTATGTCAAAGGCTATGGAGTTGACCAAAAGAACTACACCAAGGCCAAAGAGTATTTTGAGAAGGCTGCAGATAATGACGAGGTTGGCGGCCACTACAACCTCGGCGTCATGTATCTCAAGGGCATTGGAGTCAAGAGGGATGTTAAGCTCGCCTGTAAGTTCTTTGTCCTCGCTGCTAACCATGGTCAACCAAAGGCCTTCTACCAGCTCGCTAAGATTTTCCATACTGGTCTTGGCTTCAAGAAGAATATTCCCTTGGCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTAAAAGGTGATATTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTCGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGTAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCGTATTACTATGGTCGGGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATCGAATGCACAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTCTAGACCATGATCCTGCAGCAAAGTTGCCGGTCACACTGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGGAATGCTACAATTCTGACCCTCTTTGTATGCCTCCTAACTGTGCTGTATCTCCGTGAGAGGCAACGAAGGCAAGCTGCTGTTGCAGCTGGAGAGGTGGCTCAGCCAAATCACCCCAATGAGCTTGGTGTACCCGCCGCTCCCATCTAG 2043 0.5281 MGIVCDPYKTMAGPKPKLLFLIVILSLSASVGARPFVLILSQEDYKDDPPADPDSPAEWDEFAHGDAHKSEEDLDPGSWRPIFEPPAGDPQPLPESDAAYYSAVHKLMSGEPALIQDAGEEIAGLAVSGHPAAQSVLGFLWEMGLFRERSKGKAFLYHHFAAEGGNMQSKMALAYSYTRQDMLEKGVKLYGELAEVAVNSFLISKESPVIEAVRLHNGAEENKEALGKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALWWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLASRHHLYSAYNGMGYLYVKGYGVDQKNYTKAKEYFEKAADNDEVGGHYNLGVMYLKGIGVKRDVKLACKFFVLAANHGQPKAFYQLAKIFHTGLGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDIGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALDHDPAAKLPVTLALSSLWVRKNYADSFVVQVIDSLPELYPKLEAWVENVLLEEGNATILTLFVCLLTVLYLRERQRRQAAVAAGEVAQPNHPNELGVPAAPI 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02389 680 Gene3D Tetratricopeptide repeat domain 116 225 IPR011990 GO:0005515
Gma05g02389 680 SUPERFAMILY HCP-like 128 196 - -
Gma05g02389 680 SUPERFAMILY HCP-like 442 583 - -
Gma05g02389 680 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 18 662 - -
Gma05g02389 680 Gene3D Tetratricopeptide repeat domain 226 440 IPR011990 GO:0005515
Gma05g02389 680 Gene3D Tetratricopeptide repeat domain 441 602 IPR011990 GO:0005515
Gma05g02389 680 SUPERFAMILY HCP-like 230 340 - -
Gma05g02389 680 SUPERFAMILY HCP-like 340 471 - -
Gma05g02389 680 MobiDBLite consensus disorder prediction 66 95 - -
Gma05g02389 680 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 18 662 IPR044623 GO:0030433
Gma05g02389 680 SMART sel1 131 166 IPR006597 -
Gma05g02389 680 SMART sel1 547 582 IPR006597 -
Gma05g02389 680 SMART sel1 322 358 IPR006597 -
Gma05g02389 680 SMART sel1 395 430 IPR006597 -
Gma05g02389 680 SMART sel1 359 394 IPR006597 -
Gma05g02389 680 SMART sel1 249 285 IPR006597 -
Gma05g02389 680 SMART sel1 286 321 IPR006597 -
Gma05g02389 680 SMART sel1 511 546 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 131 166 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 513 535 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 249 284 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 547 581 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 323 357 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 444 462 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 399 429 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 362 393 IPR006597 -
Gma05g02389 680 Pfam Sel1 repeat 287 319 IPR006597 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02389 Gma-Chr5 44695666 44698477 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02389 K14026 - gmx:732556 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02389 05 44695666 44698477 Gma05g02389 05 44695666 44698477 ECH
Gma05g02389 05 44695666 44698477 Gma08g00526 08 4322617 4325966 GST