Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02388 ATGAGTAGTAGAAAGAGAACGGGGATGCGGGAAGGTTACGAGTTTATGCCAATACGAGATGTTGGTAGATCTGTTGGCCAGAAAGCCAAGTTGATTGGGGTTATTCTTGACTTCGGCTTTCCAAAGAAATCCAAGGGCACTGATTTTTGTTGTTGCCTAAGAATAATTGATGAAACACATCACCAAATCTCCATGGCTATTAACATGTTTGAGGAAAATGTAGAAAGACTTCCCCGTCTTGCTGCTGTCGGGGATGTAGTTGTGCTTTGTTGTGTTGAGGTAAAATCATTTAAAGGGGAAGTAAATGTTACTTTCAACAAGAGATTTTCCTCTTTTGGTTTATATAAAGGCAAAGATGGTGATGATTTGGATCCTTATCACGTTTCTTCTTATTTTCACCACGTACGTGAAGACGAGAGCTTAATAGTTAAGCTTAGAAAATGGCTGATGAATTTTCAGCCTCACGAAGATTCGAGTAATTTCCCCATGTTAAGAGAAATCAAGGAAGAAACTTCTGTTAATTTGGCATGCAAGATCCTTCATTTTTGCGAGACTGCTAAAGATGAGTGGATTATATTTTCTTGGGATGGTACTAACACTCCTTCAAATGTCATATGTTCAAAGCTTGAAGAGGAAATTAACTGTCCACTTCCTTTACAACTAGAACCCTTGCCTTTGTCAAGAGAGGTTCTATGTACTTTGCCTGTTGCTGGATCCATCTTGAGGATAATGTTTGATAAAGTCGTTGTGAAAAATCATCTGCACCTTTTAAATGTTGATAAATGGGTCAAATTTATGAATATTCATCTTAAGGTGGTTGATGGACTATGGCTTGGTGTTTTTTCCCCTCAATCAAGACTTCGATATACACCAAATGAGGACAGTCTGATTGTAGAACGTCAAAGGTTGTCTGATGAGCAGTTATTTCCTAAGCCTTTATTTATTACAGAAGAAGTTAATCAAGATCATGCGACTCCTGTTACTTTAATGACTGTCCTCACTCATTCAAAGGTGACCGCTAAATTCAAGTGTGTTGTTCGAGTGGTAGCAGCAATGCCATACCTAGCTAAAAATCTGTTGTCTAGTATTGGGAAATATAGAATGCAGCTAACATTAGAGGATTCAACGGCTAGAGTTCATGCTTTTGTTACTGGCAAGGATGGGGAGACCCTTTTTGATGGTTACCCAAGCATTGATGAGTTGACAAGGAAGCTAAATAGATTACTTGGAGTAACTGGGATAAAGGATGCTCCAAGAGATCCACCATGGGTTAGTGTTTGTCTCAAGTCATATTATGTCTCCAAAACTGATGTATGGGGCAGTAGAAACTTCAAAATATTTGGCATCAAAATAGTAGGCGATACGTGA 1368 0.3867 MSSRKRTGMREGYEFMPIRDVGRSVGQKAKLIGVILDFGFPKKSKGTDFCCCLRIIDETHHQISMAINMFEENVERLPRLAAVGDVVVLCCVEVKSFKGEVNVTFNKRFSSFGLYKGKDGDDLDPYHVSSYFHHVREDESLIVKLRKWLMNFQPHEDSSNFPMLREIKEETSVNLACKILHFCETAKDEWIIFSWDGTNTPSNVICSKLEEEINCPLPLQLEPLPLSREVLCTLPVAGSILRIMFDKVVVKNHLHLLNVDKWVKFMNIHLKVVDGLWLGVFSPQSRLRYTPNEDSLIVERQRLSDEQLFPKPLFITEEVNQDHATPVTLMTVLTHSKVTAKFKCVVRVVAAMPYLAKNLLSSIGKYRMQLTLEDSTARVHAFVTGKDGETLFDGYPSIDELTRKLNRLLGVTGIKDAPRDPPWVSVCLKSYYVSKTDVWGSRNFKIFGIKIVGDT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02388 455 CDD hPOT1_OB1_like 13 150 - -
Gma05g02388 455 Pfam Telomeric single stranded DNA binding POT1/CDC13 17 149 IPR011564 GO:0000723|GO:0000781|GO:0003677
Gma05g02388 455 SUPERFAMILY Nucleic acid-binding proteins 164 274 IPR012340 -
Gma05g02388 455 SUPERFAMILY Nucleic acid-binding proteins 15 152 IPR012340 -
Gma05g02388 455 Gene3D - 14 160 IPR012340 -
Gma05g02388 455 Gene3D - 163 287 IPR012340 -
Gma05g02388 455 PANTHER PROTECTION OF TELOMERES 1 9 451 IPR028389 GO:0000723|GO:0043047
Gma05g02388 455 SMART Telo_bind_a_2 15 150 IPR011564 GO:0000723|GO:0000781|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02388 Gma-Chr5 44691150 44695009 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02388 - - gmx:100801353 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02388 05 44691150 44695009 Gma05g02388 05 44691150 44695009 ECH
Gma05g02388 05 44691150 44695009 Gma08g00525 08 4316741 4322076 GST