Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02040 ATGGCTTTATCATTTGTTGGTGTTCCACACTGGCTTTGTCCTACTCCTACAGCTGCAAAACTGCAACACTTTCACAAGCCTTCTACTTCCACTCTTACACCCTTCTTTCCTTCTTTTTCATATCCCTTTGTTTTCGTTCGGGCTCCGCGGGCCATTGGGCCTGATGGGAAGTTCTACCCAAGCCCAGCCGACGACGACCCTCCGGAAGCCGACGAGGATTCCTCCCACGGCTTTTCCACCTTCCAACAAATCCAGCGCCAAGCCCAACGCGCTCGCCACATCGAAGAAGAAGACTACAAGAACAACCAGTCCACGTACCTCGCCGCCATCGCCGACGTCGAAGACGCCCCCGACAACGCCCCCTTCGACTCCTCCGAGGATGACCTCTTCGGCGAAATCGACAAAGCTTTAGCTCTCAAGCGCAAAGAATTCGTCTCCCAAGGCCTTCTCCAACCCAATCCCCCCAAGCAGGACCAACTCCCCGTCGCCGCCGTCGACGAGCTCCAACCGGACGAGCTCGGCGACTTGGAGGAAATCGAACGCCTCCAGGGACTCACCGGTGACGGTAACGGAAGCTCAACCGATTCTCCGTTTGAATTCGATTTTGACAGTTATGGTAAAAGTAAGGTTAGGATTGTAGAAGGGAAATTTAAGATGACTCTGGCTGAGCTTCTTGACGAGAGTAAGGTCGTGCCGGTGTCGGTTTCCGGTGATTTGGAGATTGAAATCACCGGAATTCAGCACGATTCGAGGATTGTTAGTTCTGGTGATTTGTTTGTGTGTTGTGTGGGGAGAAAAACCGATGGGCATTTGTTTCTGTCTGAGGCTGATAAGAGAGGTGCCGTTGCGGTTGTGGCTAGTAAAGAGATTGATATTGAGGACACTTTGGGGTGCAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCTTTGGCTGCCTCGTTTTTTAAACAACCTTCCACCAAAATGGCTGTGATCGGGATAACTGGGACTTATGGCAAAACGACCACCACCTGTTTGATTAAAAGTTTGTATGAGGCGATGGGGCTGCGCACCGGTATGTTGAGCTCGGTTGCTTCATATGTACATGGGGATAATAAGATGGACCTGGGTAACATGGTGCCGGATTCTGTTTTGGTTCAGAATTTGATGGCCAAGATGATTCACAATGGGACTgaggcggtggtcatggaggcgggtggtcatggGTTGGGGGATGGGAAGTATGATGAGGTTGATTTTGATATTGCGGTTTTCACTAATTTGAGTAAGGAGGAGGAGGGGGATAGGGACGCGCAGGCTAAGTTGTTCTCGAGAATGGTGGATCCGGAGAGGCACAGGAAGGTTGTTAACATTGATGATCCAAATGCGTCATTTTTTGTGTCGCAGGGGAGCCAGGAAGTTCCTGTTGTGACGTTTGCAATGGAGAATAAGGAGGCAGATGTTCATCCCTTGAAGTTTGAGCTTTCTTTGTTTGAGACACAGGTTTTGGTTAATACTCCCACAGGGATACTGGAGATTTCGTCCGGTTTGCTTGGGAAGCATAATATTTACAACATCCTTGCTGCTGTGGCAGTTGGGATTGCTGTTGGGGCACCCTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGAGTTGATTGATGAGGAGCAAGCATTTGGGGTGATAGTGGACTATGCCAGTACTCCTGATGCATTGTCTAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGAATGAAGATCCATTGGATATATTGGATGATATGTTAGCTGGGGTAGGATGGACGATGCAGGACTACCTGAAATATGGAGAGAATGACTATTATCCACCTCTTCCTAATGGTCATAGACTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATATGGTTGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAGAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGCCATTGA 2238 0.479 MALSFVGVPHWLCPTPTAAKLQHFHKPSTSTLTPFFPSFSYPFVFVRAPRAIGPDGKFYPSPADDDPPEADEDSSHGFSTFQQIQRQAQRARHIEEEDYKNNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKALALKRKEFVSQGLLQPNPPKQDQLPVAAVDELQPDELGDLEEIERLQGLTGDGNGSSTDSPFEFDFDSYGKSKVRIVEGKFKMTLAELLDESKVVPVSVSGDLEIEITGIQHDSRIVSSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLPALAASFFKQPSTKMAVIGITGTYGKTTTTCLIKSLYEAMGLRTGMLSSVASYVHGDNKMDLGNMVPDSVLVQNLMAKMIHNGTEAVVMEAGGHGLGDGKYDEVDFDIAVFTNLSKEEEGDRDAQAKLFSRMVDPERHRKVVNIDDPNASFFVSQGSQEVPVVTFAMENKEADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYASTPDALSRLLDSVRELGPRRVITVIGCCGEGDRGKRPVMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLAGVGWTMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDMVVVAGKGHETYQVEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02040 745 Gene3D - 555 732 IPR036615 GO:0009058|GO:0016881
Gma05g02040 745 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 241 722 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Gma05g02040 745 PANTHER MUR LIGASE FAMILY MEMBER 198 735 - -
Gma05g02040 745 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 198 735 - -
Gma05g02040 745 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 550 722 IPR036615 GO:0009058|GO:0016881
Gma05g02040 745 Pfam Mur ligase middle domain 331 529 IPR013221 GO:0005524|GO:0009058|GO:0016881
Gma05g02040 745 Gene3D - 220 320 - -
Gma05g02040 745 Pfam Mur ligase family, catalytic domain 242 318 IPR000713 GO:0009058|GO:0016881
Gma05g02040 745 SUPERFAMILY MurD-like peptide ligases, catalytic domain 322 547 IPR036565 GO:0005524|GO:0009058
Gma05g02040 745 Gene3D - 322 553 IPR036565 GO:0005524|GO:0009058
Gma05g02040 745 SUPERFAMILY MurE/MurF N-terminal domain 219 322 IPR035911 -
Gma05g02040 745 MobiDBLite consensus disorder prediction 56 78 - -
Gma05g02040 745 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 219 721 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Gma05g02040 745 Pfam Mur ligase family, glutamate ligase domain 550 633 IPR004101 GO:0009058|GO:0016881
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02040 Gma-Chr5 41674109 41678063 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02040 - - gmx:121174912 1418.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02040 05 41674109 41678063 Gma05g02040 05 41674109 41678063 ECH
Gma05g02040 05 41674109 41678063 Gma08g00145 08 1223480 1227315 GST