Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01939 ATGAATTCTCCAATTCATGCCCCTTCACCTCCTTCTTCTTCTTCTTCTTGCTCCTATAACCGTCCTCCTCCATGTCTCGCTCATGCTTCTCGTAATTTCAAGTTTCCTCTGCTGTTGCCACAGGCAATCCGTACCTCTCAAAAGATGTATCGCTGCTCTGGAGGCCATGTGGAGGGTTCTACTAACACTAATCCCTTGAAAAATTATGTAGTGGGCAGAAGTACTTCAGGATGGTTTGAAACCCAACCCTTGGTTTCTGAGCAATTACTCAACAGGCGCTTGTTGCCAGTGGAAGCTTTAGTAACTCCCACAGTTCAAGATTTTTCTGATACACCTCTTATTGGTGATGATAAGATTGGAGTGTTATTGTTGAACCTCGGAGGTCCAGAGACTTTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTCGCTGACCCAGATATTATACGACTTCCAAGGTTATTTAGCTTTCTTCAAAAGCCATTGGCCCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGATCTCCTCTTAGACGTATAACTGATGCACAGGCACGGCACTTTCCCATAATTTATTTTCCATATATTACTACAGCTGAAGAGTTGAGGAAATCTCTTTGGTCAAAGAATGTCCCAGCCAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAACAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCAACCAGTGGTTCAAGTCTTCGTCTCTTGGAGAGTATATTCAGAGATGATGAGTATCTAGTCAACATGCAGCACACAGTAATTCCTTCATGGTACCAGCGTGAAGGATACATTAAGGCCATGACAAATTTAATTGAAAAGGAGCTAAGAGGTTTTGACTGccctgaggagGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTAGAAGAGGCTGGTGATCCATACAAGGCAGAGATGGAGGAATGTGTTGATTTGATCATGGAAGAACTTGAAAAGAGAAAGATAACTAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCTTATACAGATGAGACAATAATTGAACTTGGGGAAAAGGGAGTAAAAAGTCTGCTGGCTGTACCAATTAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTCTAAACTCTGGTATAGAAAAGTGGGGTCGTGTTCCTGCTCTAGGAACTGAACCCACTTTCATTTCAGATTTAGCAGATGCTGTAATTGAGAGTCTCCCTTATGTTGGTGCAATGGCGGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCACTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCGCAACGTAGGGAGTTGCCGCCACCAGTAATTGTGTGGGAATGGGGATGGACCAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAAGGGTTTCTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGA 1638 0.4225 MNSPIHAPSPPSSSSSCSYNRPPPCLAHASRNFKFPLLLPQAIRTSQKMYRCSGGHVEGSTNTNPLKNYVVGRSTSGWFETQPLVSEQLLNRRLLPVEALVTPTVQDFSDTPLIGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRITDAQARHFPIIYFPYITTAEELRKSLWSKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRDDEYLVNMQHTVIPSWYQREGYIKAMTNLIEKELRGFDCPEEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGEKGVKSLLAVPISFVSEHIETLEEIDVEYKELALNSGIEKWGRVPALGTEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVIVWEWGWTKSAETWNGRAAMLAVLLLLFLEVTTGEGFLHQWGILPLFR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01939 545 Hamap Coproporphyrin III ferrochelatase [cpfC]. 117 456 IPR001015 GO:0004325|GO:0006783
Gma05g01939 545 TIGRFAM hemH: ferrochelatase 117 456 IPR001015 GO:0004325|GO:0006783
Gma05g01939 545 SUPERFAMILY Chlorophyll a-b binding protein 500 540 - -
Gma05g01939 545 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 74 466 - -
Gma05g01939 545 PANTHER FERROCHELATASE 74 466 IPR001015 GO:0004325|GO:0006783
Gma05g01939 545 Pfam Ferrochelatase 118 455 IPR001015 GO:0004325|GO:0006783
Gma05g01939 545 SUPERFAMILY Chelatase 117 462 - -
Gma05g01939 545 ProSitePatterns Ferrochelatase signature. 322 343 IPR019772 GO:0004325|GO:0006783
Gma05g01939 545 Gene3D - 118 455 - -
Gma05g01939 545 MobiDBLite consensus disorder prediction 1 21 - -
Gma05g01939 545 CDD Ferrochelatase_C 301 439 IPR033644 -
Gma05g01939 545 CDD Ferrochelatase_N 119 295 IPR033659 -
Gma05g01939 545 Gene3D - 294 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01939 Gma-Chr5 40786615 40791917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01939 K01772 - gmx:100803481 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01939 05 40786615 40791917 Gma05g01939 05 40786615 40791917 ECH
Gma05g01939 05 40786615 40791917 Gma04g01990 04 50330741 50335845 PCT
Gma05g01939 05 40786615 40791917 Gma06g01424 06 13540221 13545916 PCT
Gma04g01990 04 50330741 50335845 Gma05g01939 05 40786615 40791917 PCT
Gma06g01424 06 13540221 13545916 Gma05g01939 05 40786615 40791917 PCT