Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma05g00396 | ATGGATCCCCACCCAGGAAACCACCCCATTCTCTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGCGCCAGAACCCCCACCGCCGTTTCCCCTTCCCATTCCCATAATTTCGACATCGAACAACCACCTTCCTCTTCTTCTCCTTCATCCGTCGTCGGCCAAATGCCCAATCTCGCCGACCCTGAAATGTTGGCCTCCATGACCCGCGCCATCTCCGACGTCTCCCAGACCCGATCCGTCCTCAAGCTCATCGGGGCCCGCCCCACCCACGAGCAGGTGGACGACGCCAAGGCCAGACTCGCCGACCTCGAGGCCCATCTCTCCCGCCAGCTCCAAGAGATCGTGGGCCTCCCCAGGCCCCCCGAGATCGACGAGCCCCGCTGGCGGGCCCATGTCGCCGAGAAAGAAAATGCCATTAAGGAATCCACGGAGAAAGAGAAGCGCGTCCTCAAGTCGCTGATTCAGCTCGACCAGATGCACGATTCCTACGAGAAGCTCCTCAAGGACGCCGAGAAGCGACTCGTCAAGATTTACGAGGGCGATGGCGAAAGCGACAACGACAACAACAACGACAACGAGGGTGAGGTAAAAGAAGAGGTTGAGGAGATACTGCATGAGGCCCACGGAAAAGGCATCGAGCGGGTGGATCTTTCCGGGAAGCGCCTCAAGCTCCTGCCTCCAGCGTTTGGCCACATTCCTGCATTGGTCGTGCTCGATGTCTCCACCAATCAACTCTCGGTGATTCCTGATTCGATATCCGGATTGGCAAATCTCGAGGAGCTTAATCTCTCTTCCAATGCTTTGGAGTCACTGCCAGATTCAATTGGCTTGTTGCAGAAGTTGAAATTCCTCAATGTGTCTGGAAACAAGCTCAGTGCTCTTCCTGATTCCATCAGTCAGTGCAGGTCATTGGTGGAGCTAGATGCAGGCTTTAATAGCCTGACATATTTGCCAACAAACATTGGATATGAATTGCTTAATTTACAGAAGCTCATGATTCAGCTGAACAAGATTCGGTCTCTTCCCTCATCTGTTTGCGAGATGAAATCCTTGCGCTATCTGGATGCTCACTTCAATGAACTGCGCGGGCTTCCTATTGCAATTGGGAAATTGACTAATCTTGAAGTTCTAAACCTGAGCAGCAACTTCAGTGACCTTAGAGAACTTCCAGAGACATTTGGTGATCTGATTAGCCTCAGGGAATTGGACCTCAGCAACAACCAAATTCATGCACTTCCTGACACATTTGGTCGCCTTGATAGTTTGACCAAGCTAAACTTGGACCAGAATCCTGTTGAAGTTCCACCTATGGAGATTGTGAATCAAGGGGTCCAAGCCGTGAAGAGTTTCATGGTCCAGAGGTGGATTGATATATTGGCAGAGGAAGAAAGAAAAAGCACGCAAGTGTTGCAAGAAGGAGAGAATGACTGGTTAACACGAAGCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTAACTGAGATGATTATGTCCCCCAGAACTCCCAAGGAATCTTTTCTTGATCAGCAGCTATGA | 1536 | 0.5117 | MDPHPGNHPILSYVMSRLPSFGARTPTAVSPSHSHNFDIEQPPSSSSPSSVVGQMPNLADPEMLASMTRAISDVSQTRSVLKLIGARPTHEQVDDAKARLADLEAHLSRQLQEIVGLPRPPEIDEPRWRAHVAEKENAIKESTEKEKRVLKSLIQLDQMHDSYEKLLKDAEKRLVKIYEGDGESDNDNNNDNEGEVKEEVEEILHEAHGKGIERVDLSGKRLKLLPPAFGHIPALVVLDVSTNQLSVIPDSISGLANLEELNLSSNALESLPDSIGLLQKLKFLNVSGNKLSALPDSISQCRSLVELDAGFNSLTYLPTNIGYELLNLQKLMIQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPIAIGKLTNLEVLNLSSNFSDLRELPETFGDLISLRELDLSNNQIHALPDTFGRLDSLTKLNLDQNPVEVPPMEIVNQGVQAVKSFMVQRWIDILAEEERKSTQVLQEGENDWLTRSTSWLKNVSENVTEMIMSPRTPKESFLDQQL | 511 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma05g00396 | 511 | SUPERFAMILY | L domain-like | 208 | 437 | - | - | |
| Gma05g00396 | 511 | Coils | Coil | 93 | 113 | - | - | |
| Gma05g00396 | 511 | Gene3D | Ribonuclease Inhibitor | 129 | 321 | IPR032675 | - | |
| Gma05g00396 | 511 | Gene3D | Ribonuclease Inhibitor | 323 | 452 | IPR032675 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 255 | 277 | IPR003591 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 232 | 254 | IPR003591 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 278 | 301 | IPR003591 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 371 | 395 | IPR003591 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 325 | 348 | IPR003591 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 396 | 419 | IPR003591 | - | |
| Gma05g00396 | 511 | SMART | LRR_typ_2 | 302 | 324 | IPR003591 | - | |
| Gma05g00396 | 511 | ProSiteProfiles | Leucine-rich repeat profile. | 398 | 419 | IPR001611 | GO:0005515 | |
| Gma05g00396 | 511 | MobiDBLite | consensus disorder prediction | 24 | 53 | - | - | |
| Gma05g00396 | 511 | ProSiteProfiles | Leucine-rich repeat profile. | 280 | 301 | IPR001611 | GO:0005515 | |
| Gma05g00396 | 511 | ProSiteProfiles | Leucine-rich repeat profile. | 257 | 278 | IPR001611 | GO:0005515 | |
| Gma05g00396 | 511 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING | 4 | 500 | - | - | |
| Gma05g00396 | 511 | PANTHER | PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 | 4 | 500 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 396 | 415 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 255 | 274 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 348 | 367 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 371 | 392 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 278 | 297 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 325 | 344 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 232 | 251 | - | - | |
| Gma05g00396 | 511 | SMART | LRR_bac_2 | 301 | 320 | - | - | |
| Gma05g00396 | 511 | Pfam | Leucine rich repeat | 390 | 431 | IPR001611 | GO:0005515 | |
| Gma05g00396 | 511 | Pfam | Leucine rich repeat | 327 | 382 | IPR001611 | GO:0005515 | |
| Gma05g00396 | 511 | Pfam | Leucine rich repeat | 213 | 268 | IPR001611 | GO:0005515 | |
| Gma05g00396 | 511 | PRINTS | Leucine-rich repeat signature | 258 | 271 | - | - | |
| Gma05g00396 | 511 | PRINTS | Leucine-rich repeat signature | 396 | 409 | - | - | |
| Gma05g00396 | 511 | Coils | Coil | 153 | 173 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma05g00396 | Gma-Chr5 | 3735735 | 3737827 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma05g00396 | 207 | 435 | Receptor kinase-like Gene Family | AT1G73080 | 33.475 | 3.18e-18 | 86.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma05g00396 | - | - | gmx:100782818 | 940.258 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma05g00396 | 05 | 3735735 | 3737827 | Gma05g00396 | 05 | 3735735 | 3737827 | ECH | |
| Gma05g00396 | 05 | 3735735 | 3737827 | Gma04g01823 | 04 | 48330152 | 48333687 | PCT | |
| Gma04g01823 | 04 | 48330152 | 48333687 | Gma05g00396 | 05 | 3735735 | 3737827 | PCT |