Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01823 ATGGATCCCAACCCCGGAACCTTCCCTCTCCTCTCCTACATCATGTCGCGCCTCCCTTCCCTCACTCCCAGACCCGCCGCCCCGGCACCCTCCGATTCCGACCAATTCGACATCGAACAGCCACCGGAGATTGTGGGCCAAATGCCGCACCTGGCGGACCCGGAGCTGGTGGCCTCTATGGGCCGGGCCGTGGCACAGGTGACGCAGGCCCGCTCGGTCCTCACCCTCATCGGGGAGCGACCCACGCACGAGGAGGTCGACAATGCCCGGGCAAAGTTGGCCGACGTCGAGGCCCAGCTCTCCCGAGAACTGGAAGAGATCGTGCTGCAGGCCCGGCCCGCGGAGATCGAGATCCAGGGGTGGCGGGCCCAGCAGGCCGAGAGGGAGAGGGAGTGCAGGGAGCGGGCCGAGACGGAGAGGCGGGTGTGGAGATCGGTGCTGCAGCTGGACGAGATGCACGAGGCTTACGAGAAGCTTCTGAAGGACGCGGAGAAGCGGTTGGTGAAGATGTACGAGTCCAAAGAAGACGGCGGCGGCGGCGATGCCGACCTGGCTTATGGCGAGGAAGTCAACGAAGAGGTTGTGGGGATTCTGCAGGAGGCTTACGGCAAAGGAATGGAAAGAATTGATCTTTCTGGACGCCAGTTGAAGCTCTTGCCTGAGGCTTTTGGTCGCATTTCTGGCTTGCTCGTTTTTGATCTTTCAACCAATCAACTCTCGGCAATTCCTGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTGTCTTCAAATCTTTTGGAATCATTGCCAGATTCAATTGGGTTGTTACAAAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATTCCATCTGTCAGTGCAGGTCATTGGTGGAGTTGGATGTAAGCTTTAACAATCTCTCATATTTGCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATGATTTATTTGAACAAGATTCGATCTTTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCACTATTTGGATGCTCACTTTAATGAGCTACATGGGCTTCCAATTGCAATTGGGAGACTGACTAATCTTGAAGTTCTCAACCTGAGCAGCAACTTCAGTGACCTCAAAGAACTTCCTGAGACATTTGGTGATTTGGCTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCTCTTCCAGACACATTTGGTCGCCTTGATAATTTAATCAAGCTCAACTTGGAGCAAAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGCTTGAAGCCATAAAGACTTTTATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAAGAAAGGAAAAGCAACCAAGAAATGCAAGAACCAGAACAGGGTGGTTGGTTAACACGAAGCACCTTCTGGTTGAAGAATGTTTCTGGAAATGTAATCGGGTATATTGGAACTACCGTTGGATCTCCCATGTCACCCAAATCTCCCAGAGATGCATATCTTGATCAGCAGCTATGA 1542 0.5084 MDPNPGTFPLLSYIMSRLPSLTPRPAAPAPSDSDQFDIEQPPEIVGQMPHLADPELVASMGRAVAQVTQARSVLTLIGERPTHEEVDNARAKLADVEAQLSRELEEIVLQARPAEIEIQGWRAQQAERERECRERAETERRVWRSVLQLDEMHEAYEKLLKDAEKRLVKMYESKEDGGGGDADLAYGEEVNEEVVGILQEAYGKGMERIDLSGRQLKLLPEAFGRISGLLVFDLSTNQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDSICQCRSLVELDVSFNNLSYLPTNIGYELPNLQKLMIYLNKIRSFPSSICELKSLHYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLANLRELDLSNNQIHALPDTFGRLDNLIKLNLEQNPLELPPMEIVNQGLEAIKTFMAKRWLDILLEEERKSNQEMQEPEQGGWLTRSTFWLKNVSGNVIGYIGTTVGSPMSPKSPRDAYLDQQL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01823 513 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Gma04g01823 513 Gene3D Ribonuclease Inhibitor 379 439 IPR032675 -
Gma04g01823 513 SMART LRR_bac_2 272 291 - -
Gma04g01823 513 SMART LRR_bac_2 390 409 - -
Gma04g01823 513 SMART LRR_bac_2 295 314 - -
Gma04g01823 513 SMART LRR_bac_2 342 361 - -
Gma04g01823 513 SMART LRR_bac_2 249 268 - -
Gma04g01823 513 SMART LRR_bac_2 365 386 - -
Gma04g01823 513 SMART LRR_bac_2 319 338 - -
Gma04g01823 513 PRINTS Leucine-rich repeat signature 252 265 - -
Gma04g01823 513 PRINTS Leucine-rich repeat signature 390 403 - -
Gma04g01823 513 Coils Coil 146 173 - -
Gma04g01823 513 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 24 494 - -
Gma04g01823 513 Pfam Leucine rich repeat 367 426 IPR001611 GO:0005515
Gma04g01823 513 Pfam Leucine rich repeat 251 308 IPR001611 GO:0005515
Gma04g01823 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING 24 494 - -
Gma04g01823 513 SUPERFAMILY L domain-like 206 426 - -
Gma04g01823 513 Gene3D Ribonuclease Inhibitor 189 309 IPR032675 -
Gma04g01823 513 Gene3D Ribonuclease Inhibitor 310 378 IPR032675 -
Gma04g01823 513 SMART LRR_typ_2 365 389 IPR003591 -
Gma04g01823 513 SMART LRR_typ_2 390 413 IPR003591 -
Gma04g01823 513 SMART LRR_typ_2 319 342 IPR003591 -
Gma04g01823 513 SMART LRR_typ_2 226 248 IPR003591 -
Gma04g01823 513 SMART LRR_typ_2 296 318 IPR003591 -
Gma04g01823 513 SMART LRR_typ_2 249 271 IPR003591 -
Gma04g01823 513 SMART LRR_typ_2 272 295 IPR003591 -
Gma04g01823 513 Coils Coil 86 106 - -
Gma04g01823 513 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Gma04g01823 513 ProSiteProfiles Leucine-rich repeat profile. 274 295 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01823 Gma-Chr4 48330152 48333687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01823 219 449 Receptor kinase-like Gene Family AT4G08850 33.193 1.93e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01823 - - gmx:100803823 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01823 04 48330152 48333687 Gma04g01823 04 48330152 48333687 ECH
Gma05g00396 05 3735735 3737827 Gma04g01823 04 48330152 48333687 PCT
Gma04g01823 04 48330152 48333687 Gma05g00396 05 3735735 3737827 PCT