Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00280 ATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGAATCAGCGGGGCACCTCAGGATAACAACATAATGCTGTGGAACGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGTGAGTACAATCGAAGAGTGAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAA 459 0.4379 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00280 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Gma05g00280 152 SMART ubc_7 7 150 - -
Gma05g00280 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Gma05g00280 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Gma05g00280 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Gma05g00280 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Gma05g00280 152 CDD UBCc 7 145 IPR000608 -
Gma05g00280 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Gma05g00280 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00280 Gma-Chr5 2521637 2527532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00280 7 120 Miscellaneous Gene Families AT1G17280 31.092 5.29e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00280 K10573 - ncol:116247691 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00280 05 2521637 2527532 Gma17g00923 17 7882533 7885911 ECH
Gma05g00280 05 2521637 2527532 Gma05g00280 05 2521637 2527532 ECH
Gma17g00923 17 7882533 7885911 Gma05g00280 05 2521637 2527532 GST
Gma01g00394 01 4827736 4830893 Gma05g00280 05 2521637 2527532 PCT