Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00394 ATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGACCAGATGACACCCCTTGGGATGGAGGCACATTTAAGCTAACACTTCAGTTCATTGAGGATTATCCTAATAAACCACCAGCAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACATTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGTCCGATTTATGATGTTGCTGCAATACTTACCTCAATTCAGAGCTTGCTTTGTGATCCAAACCCAAACTCTCCAGCAAATTCAGAAGCTGCTCGGATATTTAGTGAAAACAAACGTGAATACAACAGAAGAGTACGAGACATTGTTGAGCAGAGTTGGACTGCTGATTAA 459 0.4096 MSTPARKRLMRDFKRLQLDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFIEDYPNKPPAVRFVSQMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARIFSENKREYNRRVRDIVEQSWTAD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00394 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Gma01g00394 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Gma01g00394 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Gma01g00394 152 SMART ubc_7 7 150 - -
Gma01g00394 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Gma01g00394 152 CDD UBCc 7 145 IPR000608 -
Gma01g00394 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Gma01g00394 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Gma01g00394 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00394 Gma-Chr1 4827736 4830893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00394 7 120 Miscellaneous Gene Families AT1G17280 31.092 9.74e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00394 K10573 - gmx:100500581 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00394 01 4827736 4830893 Gma01g00394 01 4827736 4830893 ECH
Gma01g00394 01 4827736 4830893 Gma17g00923 17 7882533 7885911 PCT
Gma01g00394 01 4827736 4830893 Gma05g00280 05 2521637 2527532 PCT