Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00224 ATGTCTGGTTCAAAGAAATCTCCTTTGAAGGTTGCTAAGCCTAGCTCTGCTGAATCTTGGACGAATCCATTTGATTCTGATGATGAGGGAAAGGATAGCAAAAAATATAGTTCCTCTAGAAAAACTTCTTCGGAGCGCGCACTTGCTACACTGGAAGTTAACACCAACCCCTTTGATGATGATATTGATGCCAATAAGAAATCTTCATCAACTTCGTATGCCTTTCAATCTGCCAACCGGAACAGGTATAAGAATGATTTTCGTGACTCTGGTGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAGTTATGCTGTTTACAAGGCTGAAGAGACTACAAATTCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGGATGCTACCAAGACACTAGTCACCCTTGAACAACAGGGTGAACAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGATCACGATTTAAGTCGGGGAGAAAAGCTCTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGAGCAATAACCGGCCCTGTTATTGTTGGAGatgATCCGGTCAGGAGAAAGGACAATCACTTGGAGCAGAGAGACAAGTTGGGACTGACCTCTGCACCCAAAGGGCAGTCCAAGCTACGGACCCCCCCTCCAGAACCAACAAATGCACTTGAAAAAGTTGAGGTTGAAAAAAAGAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGTTGGGAGAGCTTAAAGACATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCCCTGAATCATCTATACGATGATGTGGATGAGTTGAATTTCCGAGTGAAAGGTGCTAATCAACGTGGCCGTCGTTTGCTCGGAAAATAA 903 0.4352 MSGSKKSPLKVAKPSSAESWTNPFDSDDEGKDSKKYSSSRKTSSERALATLEVNTNPFDDDIDANKKSSSTSYAFQSANRNRYKNDFRDSGGLENQSVQELESYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLEQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPVRRKDNHLEQRDKLGLTSAPKGQSKLRTPPPEPTNALEKVEVEKKKQDDALSDLSDLLGELKDMAVDMGSEIERHNKALNHLYDDVDELNFRVKGANQRGRRLLGK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00224 300 MobiDBLite consensus disorder prediction 1 94 - -
Gma05g00224 300 Gene3D - 232 299 - -
Gma05g00224 300 SUPERFAMILY SNARE fusion complex 235 298 - -
Gma05g00224 300 Coils Coil 231 251 - -
Gma05g00224 300 SUPERFAMILY SNARE fusion complex 96 166 - -
Gma05g00224 300 MobiDBLite consensus disorder prediction 190 230 - -
Gma05g00224 300 Gene3D - 92 169 - -
Gma05g00224 300 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 300 - -
Gma05g00224 300 MobiDBLite consensus disorder prediction 67 81 - -
Gma05g00224 300 Coils Coil 120 140 - -
Gma05g00224 300 MobiDBLite consensus disorder prediction 24 41 - -
Gma05g00224 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Gma05g00224 300 MobiDBLite consensus disorder prediction 192 208 - -
Gma05g00224 300 CDD SNARE_Qc 238 296 - -
Gma05g00224 300 CDD SNARE_SNAP25N_23N_29N_SEC9N 104 167 IPR044766 GO:0005484|GO:0031201
Gma05g00224 300 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 300 - -
Gma05g00224 300 SMART tSNARE_6 101 168 IPR000727 -
Gma05g00224 300 SMART tSNARE_6 230 297 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00224 Gma-Chr5 2061091 2063967 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00224 K18211 - gmx:100809874 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00224 05 2061091 2063967 Gma05g00224 05 2061091 2063967 ECH
Gma17g00723 17 6120801 6123626 Gma05g00224 05 2061091 2063967 GST