Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02416 ATGCTGTTGCGTAACCCTGCGTTGACAGCGTCGCTGCTATCAGCCACCACAAAGAAGCTCTACAACCACCGTTATTCTACACCTGCTGCATTCATGGCGTCTTCAGGTGTCGCGTGCAGTTTGCTGGTTTTGTGTGGCAAATCACTGGCAGAGAATGAAACTGCTAAAGCTATAAAGACCAATAACACACTGAAGCTCCCTGAGGATGAAAAACTCTCACTCGTTTTGCATTCGGAGATGGATAAATCAGTTATGCAAGGGTTTTTCCAAGTTCATTCCTATATGGATTCTCTTTCCACCAATCAATTTGGCAGGCTTCTCGTTTGGTCTCCAGACTTAACTTCAACACACGATGTCGTTTCGCACAACTTTTGTGAGCTCCCCATTGGTACAGTTTGCATTGCTGATGTTCAGACCAAGGGACGAGGTCGGTCGAAGAATGTCTGGGAGTCTCCATTAGGTTGCCTCATGTTTTCTTTTACTATGCAAATGGAGGATGGACGAGTCGTTCCTTTGGTTCAGTATGTGGTTTCCCTTGCTATGACAGAGGCAATCAAGGATATCTGTGACAAAAATGGGTTACCCAGCATAGATGTTAAAATCAAGTGGCCAAATGATCTTTACTTAAATGGCTCTAAAGTTGGAGGCATTCTTTGTACCTCAACATATAAATCAAAGAAGTTCAATGTAAGTGCAGGAATAGGCTTGAATGTCAATAATAAGAAGCCAACGACATCCTTAAATACAATTCTAAAAGGGTTCTATTCAGGAGCTTACCAATTTCAAAGAGAAGAAGTTCTAGCAGCCTTTTTTAACAAATTTGAGATATTTTATGATTTATTTCTGAATCAAGGATTTCAAACCCTAGAGGAGCTATATATCAAGACATGGTTGCACAGTGGACAGAGAGTTGTTGTACAGGAAAAGAATGAGGACAAAGTGATCGAACATGTGGTAACTATTCAGGGTTTGACATCCTCGGGATATTTGTTGGCTGTCGGTGATGACCATCAAATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGACTGGTCAGGAGGAAACTCGAGTGA 1086 0.419 MLLRNPALTASLLSATTKKLYNHRYSTPAAFMASSGVACSLLVLCGKSLAENETAKAIKTNNTLKLPEDEKLSLVLHSEMDKSVMQGFFQVHSYMDSLSTNQFGRLLVWSPDLTSTHDVVSHNFCELPIGTVCIADVQTKGRGRSKNVWESPLGCLMFSFTMQMEDGRVVPLVQYVVSLAMTEAIKDICDKNGLPSIDVKIKWPNDLYLNGSKVGGILCTSTYKSKKFNVSAGIGLNVNNKKPTTSLNTILKGFYSGAYQFQREEVLAAFFNKFEIFYDLFLNQGFQTLEELYIKTWLHSGQRVVVQEKNEDKVIEHVVTIQGLTSSGYLLAVGDDHQMCELHPDGNSFDFFKGLVRRKLE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02416 361 SUPERFAMILY Class II aaRS and biotin synthetases 94 297 IPR045864 -
Gma04g02416 361 Pfam Biotin protein ligase C terminal domain 299 354 IPR003142 GO:0036211
Gma04g02416 361 TIGRFAM birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 112 335 IPR004408 GO:0004077|GO:0036211
Gma04g02416 361 CDD BPL 107 277 IPR004408 GO:0004077|GO:0036211
Gma04g02416 361 PANTHER HOLOCARBOXYLASE SYNTHETASE (BIOTIN-(PROPRIONYL-COA-CARBOXYLASE (ATP-HYDROLYSING)) LIGASE) 43 359 - -
Gma04g02416 361 PANTHER BIOTIN PROTEIN LIGASE 43 359 - -
Gma04g02416 361 Pfam Biotin/lipoate A/B protein ligase family 114 237 IPR004143 GO:0036211
Gma04g02416 361 Gene3D Bira Bifunctional Protein; Domain 2 95 296 IPR045864 -
Gma04g02416 361 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 92 282 IPR004143 GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02416 Gma-Chr4 54514434 54519939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02416 K01942 - gmx:100818402 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02416 04 54514434 54519939 Gma04g02416 04 54514434 54519939 ECH
Gma04g02416 04 54514434 54519939 Gma06g00980 06 9154216 9159266 GST